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45 protocols using lr white resin

1

Electron Microscopy Sample Preparation

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A small cube (~0.5 cm3) was cut from a paraformaldehyde-fixed sample of Ren-Bali-16–03 and placed into a 2% osmium tetroxide solution (1 mL). Staining was done overnight on a rotator after which the sample was washed five times with ddH2O and then stained with 2% uranyl acetate for another 12 hours. After washing with ddH2O, the sample was then dehydrated sequentially in 30%, 50%, 70%, 85%, and 100% ethanol for 1 hr at each step. The dehydrated sample was embedded in 1:1 LR white resin (Electron Microscopy Sciences, USA): ethanol overnight on a rotator and then transferred to 100% LR white resin for stationary embedding for 48 hrs. Polymerization was performed on a heat block at 65 °C overnight. Ultrathin sections were observed on a Talos F200× Scanning/Transmission Electron Microscope.
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2

Electron Microscopy Sample Preparation

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A small cube (~0.5 cm3) was cut from a paraformaldehyde-fixed sample of Ren-Bali-16–03 and placed into a 2% osmium tetroxide solution (1 mL). Staining was done overnight on a rotator after which the sample was washed five times with ddH2O and then stained with 2% uranyl acetate for another 12 hours. After washing with ddH2O, the sample was then dehydrated sequentially in 30%, 50%, 70%, 85%, and 100% ethanol for 1 hr at each step. The dehydrated sample was embedded in 1:1 LR white resin (Electron Microscopy Sciences, USA): ethanol overnight on a rotator and then transferred to 100% LR white resin for stationary embedding for 48 hrs. Polymerization was performed on a heat block at 65 °C overnight. Ultrathin sections were observed on a Talos F200× Scanning/Transmission Electron Microscope.
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Transmission Electron Microscopy of Microgels

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Microgels were stored in deionized water at 4 °C prior preparation for TEM. The water was removed, and equal volume of water and 4% OsO4 (Electron Microscopy Sciences) were added to the microgels for 2 h incubation. Subsequently, 1/2 volume of potassium ferrocyanide (Sigma-Aldrich) was added to the solution, and the microgels were then washed 4 times with water. After rinsing with 25% ethanol, the microgels were serially transmitted to absolute ethanol by 10 min incubations in 50, 75, 95, and 100% ethanol solutions. The microgels were then incubated in mixture of ethanol and LR White resin (Electron Microscopy Sciences) (1:1 volume ratio) for 30 min followed by 1 h incubation in pure LR White resin. The resin was removed and the microgels were incubated in fresh resin at 4 °C for 2 days. The resin was then removed, and fresh resin was added to the microgels to be hardened in 80 °C oven overnight. The tip of hardened resin containing the microgels was cut off from Eppendorf tube using wire cutter and epoxy in to stub. The stub was placed at 80 °C oven for further hardening. The sample was then cut with Rheichart Ultracut and put on grid for imaging under 75 KV H600 Hitachi TEM.
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Ultrastructural Analysis of B16-F10 Cells

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The collected B16-F10 cells were stored overnight at 4 °C in a fixative solution containing 2.5% (v/v) glutaraldehyde and 2% (v/v) paraformaldehyde in 0.1 M cacodylate buffer, pH 7.2. Fixed cells were washed in cacodylate buffer and post-fixed with 2% (v/v) osmium tetroxide in 0,1 M cacodylate buffer, pH 7.2 for 2 h at 4 °C. Samples were washed in the same buffer and dehydrated through an ascending series of ethanol and embedded in LRWhite resin (Electron Microscopy Science, PA, USA). For ultrastructural observations at least 20 ultra-thin sections (60–90 nm) were obtained using a Reichert Ultracut ultramicrotome equipped with a diamond knife (Leica Microsystems). Ultra-thin sections were collected on copper grids, stained with uranyl acetate and lead citrate, and observed with a 1200 EXII electron microscope (Jeol, Tokyo, Japan). Micrographs were captured by the SIS VELETA CCD camera equipped with iTEM software (Olympus, Tokyo, Japan).
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5

Direct NP Internalization in LAD2 Cells

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For direct NP internalization, LAD2 cells were treated for 3 and 24 h at 37 °C and 5% CO2 with (1/100 v/v) PLGA/PVA-21, PLGA/PVA-22, or PLGA/PVA; untreated cells were included as controls. LAD2-treated cells were collected, centrifuged at 230× g, and fixed overnight with 2% paraformaldehyde/2.5% glutaraldehyde (Electron Microscopy Sciences, Hatfield, PA, USA) in 0.1M phosphate buffer pH 7.2 (Sigma-Aldrich CAN, Oakville, ON, Canada). Fixed LAD2 cells were immersed in 1% osmium tetroxide (Electron Microscopy Sciences, Hatfield, PA, USA) at room temperature for 1 h before the sequential dehydration with ethanol of 50%, 70%, 95%, and 100%. The dehydrated cells were embedded in LR white resin (Electron Microscopy Sciences, Hatfield, PA, USA), and cured at 55 °C for 12 h. The ultrathin sections with 100 nm thickness, sliced by an ultra-microtome, were placed on formvar-coated copper TEM grids double-stained with uranium acetate and lead citrate. Bright field TEM images of LAD2 cell thin sections were obtained on JEOL2200FS TEM.
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6

Immunodetection of FMDV Viral Proteins

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Example 25

The LF-BK αV/β6 cell line was grown in T-75 flasks for IFA and immunoelectron microscopy (I-EM). IFAs were performed using three different antibodies 6HC4, 12FE9, and F21. The 6HC4 antibody is specific to FMDV serotypes other than O when used in IFA and was used as a negative control. Antibodies 12FE9 and F21 are specific to FMDV type O VP1 and all FMDV serotype VP2 peptides, respectively. For I-EM samples are fixed in 4% paraformaldehyde with periodate and lysine in sodium cacodylate buffer, embedded in 2% agarose, partially dehydrated in ethanol, embedded in medium grade LR White resin (Electron Microscopy Sciences). Ultrathin (80 nm) sections were cut on a Leica UC6. Immunohistochemistry was performed with antibody F21 at a 1:10 dilution and goat anti-mouse ultrasmall nanogold (Electron Microscopy Sciences), enhanced with GoldEnhance EM (Nanoprobes), post stained with uranyl acetate, and imaged on a Hitachi 7600 with a 2 k×2 k AMT camera at 80 kV.

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7

DHEA and S-P Effects on Tachyzoites

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Extracellular tachyzoites treated with DHEA, S-P or DHEA / S-P at several concentrations, for 30 min or 2 h, were processed for Transmition Electron Microscopy (TEM). Briefly, tachyzoites were resuspended in 2.5 % glutaraldehyde in 1X PBS in gentle agitation for 1 h, washed with 1X PBS, fixed with 1 % OsO4 1 h, and contrasted with 1 % aqueous uranyl acetate 2 h. Samples were dehydrated in increasing concentrations of ethanol (50-100 %), then were embedded in crescents concentrations of LR White resin (London Resin, England, Electron Microscopy Sciences, USA) and polymerized at 4ºC for 36 h under UV lamp. The samples were processed with a ultramicrotome, serial cut were performed of around 10 μm of thickness and mounted in a sample holder, the ultrastructural analysis was performed in a Transmission Electron Microscope JEM200CX 200KV (JEOL Co., Tokyo, Japan), image analysis was performed using the Digital Micrograph program (TM 3.7.0 for GSM 1.2 by the Gatan Software Team).
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8

Array Tomography for Cortical Tissue Analysis

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Array tomography analyses were performed as previously described (Hudry et al, 2013 (link); Kay et al, 2013 (link)). Five to six pieces of cortical tissue (1 mm3) were dissected and fixed for 3 h in 4% paraformaldehyde and 2.5% sucrose in 0.01 M PBS. After dehydration in ethanol, the samples were incubated in LR White resin (Electron Microscopy Sciences) overnight at 4°C before polymerization at 53°C. Ribbons of 20–40 ultrathin (70 nm thick) serial sections were cut with a Histo Jumbo diamond knife (Diatome) on an ultracut microtome (Leica) and mounted on glass coverslips.
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9

Transmission Electron Microscopy Sample Preparation

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Cells were processed for transmission electron microscopy (TEM), as described previously [40] (link), [41] (link). Cells were prefixed with 1% (w/v) osmium tetroxide buffered in 0.15 M cacodylate buffer (pH-7.2) (Sigma) for 1 h at room temperature. The prefixed cells were then washed once with the same buffer and post fixed for 2 h at room temperature in 0.15 M sodium cacodylate (Sigma) buffer containing 2% (w/v) tannic acid (Sigma) and 2% (v/v) glutaraldehyde (Sigma). Subsequently, the cells were subjected to washing with the same buffer, and were re-fixed in 1% (w/v) osmium tetroxide overnight at 4ºC. Cells were dehydrated in a graded series of ethanol solutions (Merck Millipore) ranging from 20% to 100% with an incubation period of 10 min at each step and finally embedded in LR White resin (Electron Microscopy Sciences) overnight. The embedded samples were then cut with a glass knife using an ultramicrotome by maintaining the section thickness at 70 nm. The sections were stained with 0.5% uranyl acetate (Sigma) and 0.04% lead citrate (Fluka), and observed using FEI Tecnai™ G2 Spirit electron microscope at 120 kV.
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10

Ultrastructural Analysis of Drosophila Retina

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To visualize Drosophila retina ultrastructure, adult fly heads were dissected, fixed, dehydrated, and embedded in LR White resin (Electron Microscopy Sciences) as described [67 (link)]. Thin sections (80 nm) prepared at a depth of 30–40 μm were stained with uranyl acetate and lead citrate (Ted Pella) and examined using a JEM-1400 transmission electron microscope (JEOL, Tokyo, Japan) equipped with a Gatan CCD (4k × 3.7k pixels, USA).
TEM of photoreceptor terminals was performed as described [73 (link)]. Adult fly heads were dissected in 4% PFA and the retinas were removed. The dissected lamina was fixed in a solution with 4% PFA and 2.5% glutaraldehyde for 2 h on ice, followed by fixation in 1% osmium tetroxide for 1.5 h at 4°C. Tissues were then dehydrated in a series of ethanol dilutions at 4°C (10-min wash in 10, 25, 40, 55, 70, 85, 95, and 30-min wash in 100% ethanol for 5 times). Samples were gradually infiltrated with 2 ratios of ethanol and Eponate 12 (Ted Pella), finally going into 3 changes of pure resin. Samples were allowed to infiltrate in pure resin overnight on a rotator and embedded in Eponate 12 resin (Ted Pella). Thin sections (80 nm) were stained with uranyl acetate and lead-citrate (Ted Pella) and examined using a JEM-1400 transmission electron microscope (JEOL, Tokyo, Japan) equipped with a Gatan CCD (4k × 3.7k pixels, USA).
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