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7 protocols using anti phospho s6 s235 236

1

Immunoblotting Analyses of Cellular Signaling

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Anti-p70 S6K1 (Santa Cruz Biotechnology, Dallas, TX; SC-230), anti-phospho (T389) p70 S6K1 (Cell Signaling Technology, Danvers, MA; #9205), anti-S6 (Cell Signaling Technology; #2217), anti-phospho (S235/236) S6 (Cell Signaling Technology; #4856), anti-GFP (Santa Cruz Biotechnology; SC-9996), anti-PARP-1 (Santa Cruz Biotechnology; SC-7150), anti-Akt1/2/3 (Santa Cruz Biotechnology; SC-8312), anti-phospho (S473) Akt (Santa Cruz biotechnology; SC-7958), anti-LC3B (Cell Signaling Technology; #2775), anti-p53 (Santa Cruz Biotechnology, Dallas; SC-126), and anti-actin (Millipore, Temecula, CA; mab1501) antibodies were utilized in this study.
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2

Molecular Signaling Pathway Analysis

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Anti-DKK1 (Santa Cruz Biotechnology, SC-374574), anti-S6 (Cell Signaling Technology, Danvers, MA, USA; #2217), anti-phospho (S235/236) S6 (Cell Signaling Technology, Danvers, MA, USA; #4856), Anti-p70 S6K1 (Santa Cruz Biotechnology, Dallas, TX, USA; SC-230), anti-phospho (T389) p70 S6K1 (Cell Signaling Technology, Danvers, MA, USA; #9205), anti-Oct4 (abcam, Cambridge, UK; ab19857), anti-actin (Millipore, mab1501), anti-histone H3 Lys27 trimethylation (Millipore, Burlington, MA, USA; 07-449), anti-EZH2 (Millipore, Burlington, MA, USA; 07-689), and anti-SUZ12 (abcam, Cambridge, UK; ab12073) antibodies were used in this study. Eudesmin was purchased from ChemFaces (Wuhan, Hubei, China; CFN96266).
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3

Probing S6K1 and H2B Phosphorylation Dynamics

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The DNA constructs used in this study were pRK5-myc-S6K1, pRK5-myc-S6K1-CA, pRK5-myc-S6K1-DN, and pCDNA-EGFP-H2B. The mutant constructs for H2B were generated using site-directed mutagenesis (pCDNA-EGFP-H2B S36D and pCDNA-EGPF-H2B S36A). Anti-p70 S6K1 (Cell Signaling Technology; #9202, Santa Cruz Biotechnology; SC-8418), anti-phospho (T389) p70 S6K1 (Cell Signaling Technology; #9234), anti-S6 (Cell Signaling Technology; #2217), anti-phospho (S235/236) S6 (Cell Signaling Technology; #4856), anti-GFP (Santa Cruz Biotechnology; SC-9996), anti-histone H3 (Santa Cruz Biotechnology; SC-10809), anti-histone H3 Lys27 trimethylation (Millipore; 07-449), anti-histone H2B (Abcam; ab18977) anti-histone H2B Ser36 phosphorylation (ECM Biosciences; HP4331), anti-tubulin (Santa Cruz Biotechnology; SC-32293), anti-actin (Millipore; mab1501), anti-KMT6/EZH2 (Abcam; ab3748), anti-Lamin A/C (Cell Signaling Technology; #2032), and anti-PolII (Santa Cruz Biotechnology; SC-900) antibodies were used in this study.
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4

Western Blot Analysis of AKT and mTOR Signaling

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Cell lysates were obtained from in vitro generated lymphocytes and SDS-PAGE was performed. After the transfer to a PVDF membrane (Millipore), the samples were incubated with Abs. For the assessment of AKT and mTOR activation, Bregs and Th17 cells treated with pentanoate were analyzed with following Abs: anti-phospho-AKTSer437 (#9271, Cell Signaling Technology, 1:1000), anti-phospho-AKTThr308 (#13038, Cell Signaling Technology, 1:1000), anti-total AKT (#9272, Cell Signaling Technology, 1:1000), anti-phospho-mTORSer2448 (#5536, Cell Signaling Technology, 1:1000), anti-total mTOR (#2983, Cell Signaling Technology, 1:1000), anti-phosphoS6KT389 (#9205, Cell Signaling Technology, 1:1000), anti-total S6K (#9202, Cell Signaling Technology, 1:1000), anti-phosphoS6S235/236 (#2211, Cell Signaling Technology, 1:1000), and anti-total S6 (#2217, Cell Signaling Technology, 1:1000). The original uncropped scans of all western blots are shown in Supplementary Fig. 8.
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5

Protein Expression Quantification Protocol

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Anti-phospho-S6 (S235/236, 1:500), anti-S6 (1:1000), anti-phospho-4E-BP (T37/46, 1:500), anti-4E-BP (1:1000), anti-phospho-STAT3 (Y705, 1:500) and anti-STAT3 (1:500) antibodies were purchased from Cell Signaling Technology (Danvers, MA). Anti-Actin (1:10,000) antibodies, phosphatase Inhibitor Cocktails 2 and 3, and dimethyl sulfoxide (DMSO) were purchased from Sigma Aldrich (St. Louis, MO). The nitrocellulose membrane was purchased from EMD Millipore (Billerica, MA, USA). Enhanced chemiluminescence (ECL) was purchased from GE Healthcare (Pittsburg, PA). Donkey anti-rabbit and donkey anti-mouse horseradish peroxidase (HRP) were purchased from Jackson ImmunoResearch (West Grove, PA). AMV reverse transcriptase was purchased from Promega (Madison, WI). SYBR Green PCR Master mix was purchased from Thermo Fisher Scientific, Inc. (Waltham, MA, USA). EDTA-free complete mini Protease Inhibitor Cocktail was purchased from Roche (Indianapolis, IN). NuPAGE Bis-Tris precast gels and Phosphate buffered saline (PBS) were purchased from Life Technologies (Grand Island, NY). Bicinchoninic acid (BCA) protein assay kit was obtained from Thermo Scientific (Rockford, IL). ProSignal Blotting Film was purchased from Genesee Scientific (El Cajon, CA). Ethyl alcohol (190 proof) was purchased from VWR (Radnor, PA).
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6

Phospho-Akt and Apoptosis Assay

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Anti-phospho-Akt T450 was purchased from Abcam Technology. Anti-phospho-Akt S473, anti-pan-Akt, anti-phospho-S6 S235/236, and anti-β-actin were purchased from Cell Signaling Technology. Reagents used for flow cytometry were BD Pharmingen FITC Annexin-V Apoptosis Detection Kit I purchased from BD company. All reagents were used at a 1 : 100 dilution of the stock from the same company.
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7

Imaging and Western Blot Reagents

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Rapamycin and anti-FLAG M2 (#MAB3118) were purchased from Merck Millipore. Antibodies against GFP were purchased from NacalaiTesque (#04404-26) or Cell Signaling Technology (#2956). Anti-LAMP2 (#ab25631) and anti-vinculin (#ab73412) from Abcam, and anti-AKT (#4691), anti-phospho-AKT S473 (#4060), anti-mTOR (#2983), anti-Rab5 (#3547), anti-Rab7 (#9367), anti-S6 (#2217), anti-phospho-S6 S235/236 (#4858), anti-S6K (#2708), anti-phospho-S6K T389 (#9234), and anti-TSC2 (#4308) were purchased from Cell Signaling Technology. Anti-PMP70 (#SAB4200181) antibodies were obtained from Sigma, anti-SmgGDS (#sc-390003) and anti-GAPDH (#sc-32233) from Santa Cruz Biotechnology, anti-RHEB (#18-661-15237) from Gen-Way, anti-RHEBL1 (#H00121268-M01) from Abnova, and anti-Myc (#M047-7) from MBL. Anti-golgin 97 (#A21270), Lyso-Tracker, and MitoTracker were purchased from Molecular Probes. FTI was purchased from Tocris Bioscience.
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