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17 protocols using oxolinic acid

1

Development of Fluoroquinolone Immunoassays

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All of the chemicals used in this investigation were of analytical grade. Danofloxacin (DAN), ofloxacin (OFL), levofloxacin (LEV), garenoxacin (GAR), pefloxacin (PEF), gatifloxacin (GAT), clinafloxacin (CLI), sarafloxacin (SAR), lomefloxacin (LOM), tosufloxacin (TOZ), sparfloxacin (SPA), difloxacin (DIF), pazufloxacin (PAZ), marbofloxacin (MAR), moxifloxacin (MOX), rufloxacin (RUF), norfloxacin (NOR), ciprofloxacin (CIP), enrofloxacin (ENR), pipemidic acid (PIP), nalidixic acid (NAL), oxolinic acid (OXO), orbifloxacin (ORB), enoxacin (ENO), nadifloxacin (NAD), flumequine (FLU), bovine serum albumin (BSA), ovalbumine (OVA), casein, 1-ethyl-3-(dimethylaminopropyl) carbodiimide hydrochloride (EDC), N-hydroxysuccinimide (NHS), N,N-dimethylformamide (DMF), ethylenediamine hydrochloride, triethylamine, sodium borohydride, glutardialdehyde, 4-aminomethylfluorescein (4-AMF), 3,3′,5,5′-tetramethylbenzidine (TMB), and Tween-20 were Sigma-Aldrich (St. Louis, MO, USA) products. Complete and incomplete Freund’s adjuvants were produced by Becton Dickinson (Franklin Lakes, NJ, USA). Peroxidase-labeled anti-rabbit immunoglobulins were from the Gamaleya Institute of Microbiology and Epidemiology (Moscow, Russia). All other chemicals (salts and solvents of analytical grade) were from Khimmed (Moscow, Russia).
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2

Comprehensive Veterinary Drug Extraction

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All solvents (HPLC/analytical grade) were purchased from Fluka (Sigma- Aldrich, St. Louis, MO, USA). Trichloroacetic acid (TCA) crystals and the reagents to prepare an EDTA-McIlvaine buffer solution, pH 4 (disodium hydrogen phosphate dihydrate, citric acid monohydrate and EDTA) were purchased from Fluka.
Formic acid (98–100%) was obtained from Riedel-de Haën (Sigma-Aldrich, St. Louis, MO, USA).
The extraction cartridges (Oasis HLB 3 mL, 60 mg) were provided by Waters (Milford, MA, USA).Amoxicillin, ampicillin, benzylpenicillin, cefalexin, cefquinome, ceftiofur, chloramphenicol, chlortetracycline, ciprofloxacin, danofloxacin, dimetridazole, doxycycline, enrofloxacin, florfenicol, florfenicol amine, flumequine, furaltadone, furazolidone, lincomycin, lomefloxacin hydrochloride, marbofloxacin, nalidixic acid, nitrofurazone, oxolinic acid, oxytetracycline, ronidazole, spyramicin, sulphadiazine, sulphadimethoxine, sulphadimidine, sulphamerazine, sulphathiazole, tetracycline hydrochloride, thiamphenicol, tilmicosine, tinidazole, trimethoprim, tylosin, and enrofloxacin d5 as the internal standards (IS) (purity >98%) were used and purchased from Fluka (Sigma-Aldrich, St. Louis, MO, USA).
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3

Antibiotic Susceptibility Determination by Broth Dilution

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The minimum inhibitory concentrations (MICs) were determined using broth dilution methods according to CLSI (2017) for florfenicol (FFC), tetracycline (TET), sulfamethoxazole (SUL),
sulfamethoxazole-trimethoprim (5:1 SXT), oxolinic acid (OXO), enrofloxacin (ENR), doxycycline (DOX), gentamicin (GEN), erythromycin (E), amoxicillin (AMX), and ciprofloxacin (CIP), which
were all obtained from Sigma-Aldrich (St. Louis, MO, USA; product numbers F1427, 31741, S7507, T7883 [trimethoprim], 67126, 17849, 33429, G1914, E5389, A8523, and 17850, respectively), with
dilutions of 0.008 to 256 µg/ml of E. coli ATCC 25922 used as the quality control (QC) strains.
After incubation at 22°C for 24–48 hr, the plates were measured at a wavelength of 595 nm using a microplate reader (Multiskan Go, Thermo Fisher Scientific, Waltham, MA, USA), and MICs were
defined as the lowest concentration of antibiotic that inhibited visible growth (turbidity) [36 ].
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4

Preparation of Stock Solutions for Experiments

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Oxolinic acid, kanamycin, ampicillin, thiourea, hydrogen peroxide, and 2,2′-bipyridyl were obtained from Sigma Chemical Co. (St. Louis, MO). Ciprofloxacin hydrochloride monohydrate was obtained from Bayer AG (Wuppertal, Germany). Antibiotics were dissolved in distilled water (ampicillin to 100 mg/ml, kanamycin to 50 mg/ml, ciprofloxacin to 10 mg/ml) or 100 mM sodium hydroxide (Oxolinic acid to 10 mg/ml). thiourea (1 M) was dissolved in distilled water, and 2, 2′-bipyridyl (50 mM) was dissolved in dimethyl sulfoxide. Stock solutions of reagent were stored at −20°C for several weeks during experimentation.
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5

Quantification of Antibiotics and Pesticides

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Antibiotics and pesticide residues were analyzed using analytic grade reagents. Standards of high purity grades (>99%) for 26 antibiotics belonging to four families: Sulfonamides (sulfacetamide, sulfisomidine, SMT, sulfapyridine, sulfamerazine, sulfameter, sulfachloropyridazine, sulfamethoxazole, sulfabenzamide, sulfadimethoxine, sulfaquinoxaline, sulfamethoxypyridazine, and sulfadoxine), quinolones (nalidixic acid, oxolinic acid, CIP, norfloxacin, ofloxacin, flumequine, danofloxacin, enrofloxacin, lomefloxacin, and sarafloxacin), tetracyclines (tetracycline and oxytetracycline), and β-lactams (ampicillin) in addition to a hundred pesticide standards were procured from Sigma-Aldrich. Each pesticide stock solution was accurately prepared in acetonitrile at a concentration of 1 g/L. The working standards were freshly prepared by diluting the stock solution in acetonitrile to the desired concentration. Both stock and working solutions were stored at −20°C.
High-performance liquid chromatography (HPLC)-grade water, HPLC-grade acetonitrile, disodium ethylenediaminetetraacetate dihydrate (Na2 EDTA), and magnesium sulfate (MgSO4) were also supplied by Sigma-Aldrich.
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6

Comprehensive Drug Compound Library for Research

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The Prestwick library (Prestwick Chemical) contains 1120 approved drugs dissolved in DMSO at a stock concentration of 10 mM. Other compounds were purchased from the following sources: from Cayman Chemical: flumequine, oxolinic acid, etoposide, mitoxantrone (hydrochloride), ellipticine, bleomycin (sulfate), hydroxyurea, actinomycin D, triptolide, and UNC1999; from Sigma-Aldrich: lomefloxacin hydrochloride, ofloxacin, and sodium salicylate; from ApexBio: amsacrine; from Santa Cruz Biotechnology: ICRF-193, sobuzoxane, and aclarubicin (aclacinomycin A); from Tocris: UNC2400. All individually purchased compounds were dissolved in DMSO or water. Chemical structures were generated using PubChem Sketcher.
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7

E. coli Growth and Genetic Manipulation

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E. coli K-12 strains (SI Appendix, Table S1) were grown aerobically at 37 °C in LB medium (63 (link)) with shaking at 200 rpm. Colony formation was on LB agar at 37 °C. Bacteriophage P1-mediated transduction (64 ) or CRISPR-based allelic exchange (24 (link)) was used for strain construction. Flow cytometry reagents were purchased from Becton Dickinson. Tryptone, yeast extract, powder for LB broth and agar, and carboxy-H2DCFDA were obtained from Thermo Fisher Scientific. Other reagents, including antimicrobials (ciprofloxacin, oxolinic acid, kanamycin, ampicillin, tetracycline, moxifloxacin, and chloramphenicol), phenol, dimethyl 2-oxoglutarate, cyclic AMP, sodium pyruvate, and DMSO were purchased from Sigma-Aldrich. Gentamicin, amikacin, hydrogen peroxide, chlorhexidine, ethanol, isopropanol, 1-butanol, potassium dichromate, sodium hypochlorite solution (5.2%), hydrogen chloride, and sodium hydroxide were purchased from Sangon Biotech. Meropenem (Shenghuaxi Pharmaceutical) and ceftriaxone (Roche) were from Zhongshan Hospital (Xiamen, China) pharmacy.
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8

Antimicrobial Susceptibility Assays of F. psychrophilum

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The antimicrobial agents used to perform the susceptibility assays of F. psychrophilum isolates were those currently licensed for treatment of Gram-negative bacterial pathogens in the Chilean salmonid farm industry. In addition, due to its worldwide use in fish aquaculture, enrofloxacin was included in the study. The antimicrobials used were amoxicillin, florfenicol, oxytetracycline, oxolinic acid, flumequine and enrofloxacin, and were commercially obtained from Sigma (Sigma, Poole, UK). Antimicrobial solutions were prepared according to CLSI guidelines (CLSI, 2006 ) and solvents used were deionized distilled water for oxytetracycline-HCl, 95% ethanol for amoxicillin and florfenicol and 0.1 M NaOH for oxolinic acid, flumequine, and enrofloxacin. All solutions were filter-sterilized (0.22 μm) and used immediately.
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9

Lanthanide Complexes with Oxolinic Acid

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All reagents and solvents were of analytical reagent grade and were used without further purification. Oxolinic acid, YCl3·6H2O, LaCl3, EuCl3·6H2O, GdCl3·6H2O, SmCl3·6H2O, TbCl3·6H2O, human transferrin, human serum albumin and double-stranded calf-thymus DNA were purchased from Sigma Aldrich Chemical Co. (Schnelldorf, Germany). The following abbreviations were used to designate signal intensity: b = broad, w = weak, m = medium, s = sharp.
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10

Simultaneous Determination of Antibiotic Families

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All reagents were of analytical grade. Antibiotic standards of 4 different families, sulfonamides (sulfacetamide, sulfapyridine, sulfamerazine, sulfamethazine, sulfadimidine, sulfameter; sulfamethoxypyridazine, sulfachloropyridazine, sulfadimethoxine, sulfadoxine, sulfamethoxazole, sulfabenzamide, and sulfaquinoxaline), quinolones (nalidixic acid, oxolinic acid, ciprofloxacin, and norfloxacin, ofloxacin, flumequine, danofloxacin, enrofloxacin, lomefloxacin, and sarafloxacin), tetracyclines (tetracycline, oxytetracycline, and doxycycline), and beta-lactam antibiotics (amoxicillin, ampicillin, cloxacillin, and penicillin G), were purchased from (Sigma-Aldrich, St louis, MO, United States). All the standards were of high purity grades (>99%). Individual stock solutions were prepared at 1 g/L in acetonitrile and stored at −18 °C.
The working standard solutions containing all analytes except the lactams group with variable concentrations, according to their MRLs, was prepared as dilution of the stock solution in water /acetonitrile ratio of 70:30 (v/v), and the working standard solutions were kept at −20 °C in brown glass and were used for 1 week.
HPLC-grade water, HPLC-grade acetonitrile, trifluoroacetic acid (TFA; 0.2%), disodium ethylenediaminetetraacetate dihydrate (Na2EDTA), and magnesium sulfate (MgSO4) were also supplied by Sigma-Aldrich.
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