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8 protocols using col1a

1

Western Blot Analysis of Extracellular Matrix Proteins

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Cells were lysed on ice for 20 min using a lysis buffer and centrifuged at 14,000 ×g for 10 min at 4°C. For sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), samples were transferred onto nitrocellulose membranes and the membranes were blotted with appropriate primary antibodies at a dilution of 1:1000. The membranes were then treated with peroxidase-conjugated secondary antibodies (Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA). Bound antibodies were detected with Super Signal West Pico PLUS Chemiluminescent Substrate (ECL; Amersham, Arlington Heights, IL, USA) and developed with Kodak X-OMAT films (Kodak, New Haven, CT, USA). Primary antibodies used in this study were COL-1A (ab34710; Abcam, Cambridge, UK), α-SMA (ab5694; Abcam, Cambridge, UK), fibronectin (sc-69681; Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA), TGF-β (sc-130348; Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA), and GAPDH (ATGEN, Seongnam-si, Gyeonggi-do, South Korea) antibodies.
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2

Western Blotting for Protein Expression Analysis

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Western blotting assay was carried out as described45 (link),46 (link). Briefly, tissue or cell lysates were prepared in Laemmli Sample Buffer. Equal amounts of total proteins were subjected SDS-PAGE and transferred to PVDF membranes, which were blocked and incubated overnight with the primary antibodies against Akt (Santa Cruz Biotechnology), p-Akt (Santa Cruz Biotechnology), Col1a (Abcam), fibronectin (Abcam), α-Sma (Abcam), or Gapdh (Abcam). After being washed, the membranes were incubated with respective secondary antibodies conjugated with horseradish peroxidase (HRP). Immune-reactive signals were visualized by the Enhanced Chemiluminescence (ECL) kit (Millipore, America) on Syngene PXi6 Access imaging system (Frederick, MD). The band intensities were quantified using Image Pro Plus 6.0.
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3

Quantitative Intracellular Protein Expression

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Intracellular protein expression was assessed with the In‐Cell Western assay (ICW) as previously reported (Man et al., 2021). Briefly, cells were fixed in 10% NBF, permeabilised by 0.1% Triton™ X‐100 in PBS and non‐specific binding was blocked using the Odyssey blocking buffer (Li‐Cor Biosciences, UK). Samples were incubated overnight at 4°C with primary antibodies to ALP (1:300), Col1a (1:200), and OCN (1:400) (Abcam, UK) in Odyssey® buffer. Cells were then incubated with IRDye 800CW secondary antibody (1:800) and CellTag™ 700 stain (1:500; Li‐Cor Biosciences, UK) in Odyssey blocking buffer for 1 h. Prior to scanning, samples were then washed in 0.1% Tween20 in PBS and analysed on an Odyssey SA Imaging System (Li‐Cor Biosciences, UK) at 700 and 800 nm. Quantitative analysis was performed using the Image Studio (Li‐Cor Biosciences: version 5).
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4

Comprehensive IHC Marker Analysis

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For IHC analysis, the sections were incubated with antibody against α1-type 1 collagen (COL1A), α-SMA, VWF, NOX4, NLRP3, caspase-1, IL-1β (1:100; Abcam, Cambridge, MA), Smad7, Spry1 (1:50; Santa Cruz Biotechnology).
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5

Quantifying Osteoblast Protein Expression

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The expression of osteoblast-related proteins was assessed using the ICW assay according to the manufacturer’s instructions. Briefly, cells were fixed in 10% neutral buffered formalin (NBF, Cellpath, Newtown, UK) for 20 minutes prior to be permeabilised with 0.1% Triton X-100 in PBS for 30 min and then blocked with LICOR Odyssey blocking buffer (Li-Cor Biosciences, Cambridge, UK) for 1.5 h at room temperature. The samples were incubated overnight at 4 °C with primary antibodies to ALP (1:300), COL1A (1:200), OCN (1:400) (Abcam, Cambridge, UK) and BMP2 (1:500) (Invitrogen, Life Technologies, Paisley, UK) in Odyssey buffer. Samples were washed in PBS containing 0.1% Tween 20 for five times and then incubated with the IRDye 800CW secondary antibody (1:800) and the CellTag 700 stain (1:500; Li-Cor Biosciences, Cambridge, UK) in the Odyssey blocking buffer for 1 h at room temperature [58 (link)]. The plates were read under the Odyssey SA Imaging System (Li-Cor Biosciences, Cambridge, UK) at both 700 and 800 nm. Relative fluorescent intensity (IRDye 800CW) was normalised with cell number (CellTag 700 stain). The data were quantified using the Image Studio analysis software (Li-Cor Biosciences: v5) [59 (link)].
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6

Immunostaining of Lung Tissue Markers

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For immunofluorescence staining of MKL1, FSP1 and Col1a, the tissue slices were incubated with anti-MKL1 (Abcam, 1:200), anti-FSP1 antibodies (Proteintech, 1:100) and anti- Col1a (Abcam, 1:200) respectively, in one humidified chamber at 4°C overnight, followed by incubation with FITC-labeled secondary antibodies at 37°C for 1 h. Then, cell nuclei were stained with DAPI (Sigma) for 15 min. The immune stained images were captured using a confocal microscope (Olympus, Tokyo, Japan).
Immunohistochemistry was performed. Lung paraffin-embedded sections were permeabilized and blocked with 5% BSA, and then incubated with anti-CD68 (Proteintech, 1:100), and anti-CD45 (Proteintech, 1:100) respectively at 4°C overnight, then incubated with secondary antibody (Beyotime Institute of Biotechnology, 1:200) at room temperature for 1 h. Positive immunostaining was visualized by using the diaminobenzidine substrate (DAB, Thermo Fisher, United States) for 1 min. Next hematoxylin was utilized to stain nuclei for 20 s. The immune stained images were captured using a confocal microscope (Olympus, Tokyo, Japan).
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7

Osteogenic Marker COL1A Analysis

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The calvarial were decalcified, embedded in paraffin and sectioned (5 μm). Afterward, for immunohistochemical assessment of the osteogenesis, the marker staining of COL1A was observed. Sections were incubated 12 h at 4°C with COL1A (1:500; Abcam). Afterward, the sections were incubated with the biotinylated secondary antibodies (Zhongshan Biotechnology Corporation, Ltd., China).
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8

NIH-3T3 Cell Culture Protocol

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Mouse fibroblast line NIH-3T3 cells were obtained from ATCC (Manassas, VA) and maintained in complete Dulbecco’s Modified Eagle Medium(DMEM) containing 10% fetal bovine serum (Invitrogen, Carlsbad, CA), 100 units of penicillin and 100 µg of streptomycin at 37 °C in 5% CO2. Ang II was purchased from Sigma-Aldrich (St. Louis, MO). PI3Kγ inhibitor AS605240 was purchased from Selleckchem (Huston, TX). Akt and p-Akt antibodies were obtained from Santa Cruz Biotechnology (Dallas, TX); while Col1a, fibronectin, α-Sma and Gapdh antibodies were purchased from Abcam (Cambridge, MA). Unless otherwise indicated, all chemicals were purchased from Sigma-Aldrich (St. Louis, MO) or Thermo-Fisher Scientific (Pittsburgh, PA).
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