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13 protocols using ecm cell adhesion array kit

1

Quantitative Cell Adhesion Assay

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Adhesion assays were developed using a 96 well fluorimetric ECM Cell Adhesion Array Kit (Millipore) in triplicates for each cell culture condition, following instructions by the manufacturer. Briefly, 105 cells were incubated for 2 h at 37°C. Then cells were lysed and data was obtained by fluorometry (485/530nm excitation/emission filters) with blank subtraction (adhesion on BSA) using a Synergy H4 Hybrid reader. All data are the mean of three independent experiments.
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2

ECM Cell Adhesion Assay for Hepatocytes

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Adhesion was assessed by using a colorimetric ECM Cell Adhesion Array Kit (ECM540; Millipore) according to the manufacturer’s instructions. Primary mouse hepatocytes were isolated as described above, plated in triplicate at 50,000 cells per well, and incubated for 2 hours at 37°C in 5% CO2. Absorbance was measured at 570 nm by using a Synergy HT microplate reader (BioTek, Swindon, UK). Relative absorbance was calculated by standardizing to absorbance in the Collagen I well, before calculation of mean relative absorbance for each extracellular matrix protein for each sample.
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3

Cell Adhesion Assay Protocol

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Cells were seeded at 100,000 cells per well using non-coated 24-well plates and allowed to adhere to the plate for 2 h at 37° before removal of the supernatant and non-adherent cells. To quantify adhesion, cells were fixed with 4% PFA for 30 min, washed with PBS, stained with Toluidine Blue for 1 h, air dried overnight, and dissolved in 2% SDS solution. Optical density was measured at 620 nm. To evaluate cell surface areas, adherent cells were imaged using a HBO 100 AXIO microscope (Carl Zeiss), and cell surface areas were measured for 15 representative fields using ImageJ.
For the human Rh5, Rh30, and Rh41 sarcoma cell lines, adhesion assays were carried out using the ECM Cell Adhesion Array Kit (ECM540; Millipore) according to the manufacturer’s instructions. Briefly, cells were seeded at 20,000 cells per well, allowed to adhere for 2 h at 37° and stained according to the manufacturer’s instructions. The absorbance was then measured at 560 nm. For each well, the ratio between the absorbances obtained for cells grown on coated and non-coated surfaces was calculated.
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4

ECM Adhesion Assay for NHE3 Knockdown

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ECM adhesion assay of control or NHE3kd cells (2 × 105 cells/well, 2-h adhesion time) was performed using colorimetric ECM Cell Adhesion Array kit (Millipore, Cat. #ECM540) according to the manufacturer’s protocol.
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5

ECM Cell Adhesion Assay for MCL

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These assays were performed as described previously (52 (link)). Briefly, the ECM Cell Adhesion Array Kit (ECM540, Millipore) was used to screen for MCL cell adhesion to the ECM according to the manufacturer’s manual. For specific cell adhesion assay, the plates were first coated with 10% FBS, fibronectin, or laminin, seeded with MCL cells pretreated with MI-2 at 0.5 μM for 30 minutes, and incubated for an additional 4 hours. The cells in suspension were thoroughly washed with PBS, and the resulting cells were lysed with Cell Titer-Glo Luminescent Cell Viability Assay Reagent (Promega). A BioTek Synergy HTX Multi-Mode microplate reader was used to quantify luminescence.
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6

CXCR7 Signaling Pathway Analysis

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RPMI media was from Invitrogen (Carlsbad, CA, USA). Enhanced chemiluminescence (ECL) reagents and nitrocellulose membrane Hybond-C extra were from Amersham Pharmacia Biotech (Cologno Monzese, Milano, Italy), Immobilon Western reagents and ECM cell adhesion array kit were from Millipore Corporation (Billerica, MA, USA).
Recombinant CXCL12 was purchased from R&D (Minneapolis, MN, USA). CCX733, CCX771 and CCX704 were kindly provided by Dr. Mark Penfold (Chemocentryx, Mountain View, CA, USA). Anti-CXCR7 antibody used for immunoprecipitation was from Biolegend (San Diego, CA, USA). Antibodies against CXCR4, β-arrestin 2, PARP and anti-CXCR7 antibodies used for Western blotting were from Abcam (Cambridge, United Kingdom). Immunohistochemistry was performed with an anti-CXCR7 Ab purchased from Proteintech (Rosemont, IL, USA). 3-(4,5-dimethylthiazol-2-yl)-2,5diphenyltetrazolium bromide (MTT), arsenic thrioxide (AT), monoclonal antibodies against β-actin and vinculin were purchased from Sigma (St. Louis, MO, USA). All other reagents were of analytical grade.
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7

ECM Adhesion Assay Protocol

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Cell adhesion to selected components of extracellular matrix (collagen I, collagen II, collagen IV, fibronectin, laminin, tenascin, vitronectin) was measured with the use of ECM Cell Adhesion Array Kit (Merck) according to the manufacturer protocol. Cells were detached from the wells and suspended in Assay Buffer. Then they were seeded on ECM protein-coated wells. After 2 h incubation, cells were rinsed with Assay Buffer, and Cell Stain Solution was added to each well. Wells were then washed, and Extraction Buffer was added to solubilise cell-bound stain. The absorbance was read at 570 nm on a microplate reader (iMark, Bio-Rad).
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8

Extracellular Matrix Adhesion Assay

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The assay was performed using the colorimetric ECM Cell Adhesion Array Kit (Merck Millipore, Germany) and also 96-well plates coated by ourselves. The ECM Array microtiter plates, pre-coated with different extracellular matrix proteins (Purified human Collagen I, Collagen II, Collagen IV, Fibronectin, Laminin, Tenascin, Vitronectin), were used according to the manufacturer’s instructions. Independently, 96-well culture microplates (Corning, USA) were coated with fibronectin (20 μg/ml) or laminin-1 (10 μg/ml), and incubated at 4 °C overnight. Non-specific binding sites on the plates were blocked by a one-hour incubation with 0.5% BSA in the RPMI medium at 37 °C in a CO2 incubator. Next, the cells were counted and re-suspended in the culture medium to final concentration. Then, 50 μl of cell suspension of 4 × 105 cells/ml were seeded in the wells (in triplicates) and allowed to adhere for 30–60 min at 37 °C. After that, unattached cells were removed by washing, and adherent cells were fixed with 4% PFA for 15 min and then stained with crystal violet solution (Sigma Aldrich, USA) for 10 min. After extensive washing, the dye was extracted using 2% SDS and quantified by spectrophotometry at 550 nm using a microplate reader (Multiskan RC, Labsystems, Thermo, Finland).
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9

RAGE Inhibitor Effects on Cell Adhesion

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Cell adhesion assays were performed using the ECM Cell Adhesion Array kit (cat# ECM540, EMD Millipore) according the manufacturer’s instructions. 4175 cells were pretreated with 1 µM RAGE inhibitors (TTP488) or 0.1% DMSO for 48 h in culture media. Cells were detached from tissue culture plates using Accutase cell detachment solution (cat# AT104, Innovative Cell Technologies, Inc.), and 1.5 × 105 cells/well seeded in triplicate to each well of the ECM Array Plate. Cells were then incubated for 2 h at 37 °C in a CO2 incubator. Cells were fixed in Cell Stain Solution (EMD Millipore) for 5 min, and the stain was extracted using Extraction Buffer (EMD Millipore), and total cell adhesion per well quantified in each by absorbance measurement at 595 nm (FLUOstar Omega microplate reader, BMG LABTECH). The measured absorbance was plotted as OD compared to both DMSO vehicle control, and a negative control well containing BSA.
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10

Quantifying Cell Adhesion to ECM Proteins

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Cells were cultured for 14 days with or without E2 (10 nM). The ECM Cell Adhesion Array kit (#ECM 540, Merck KGaA) was used according to the manufacturer’s instructions. Adhesion to collagen I and IV (#804592 and #C5533, Merck KGaA) was independently validated on collagen-coated (1 µg/cm2) 96-well plates. Cells (7 × 104 cells per well) were allowed to adhere for 30 min. The wells were washed three times with PBS, fixed with cold methanol, and stained with 0.1% crystal violet. The adsorbed dye was extracted with a 10% acetic acid solution for 5 min, and measurement was performed at 595 nm on the Synergy2 microtiter plate reader (BioTek Instruments).
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