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8 protocols using anti myc clone 9e10

1

Antibody Characterization in Entamoeba

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The anti-EhBip [17 (link)], anti-EhRab8A [17 (link)], anti-EhVps26 [19 (link)] antibodies used were described previously. The anti-HA antibody clone 16B12 and anti-Myc clone 9E10 monoclonal antibodies were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). Anti-EhCdc50 antibody was produced as described below.
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2

Investigating Cell Death Mechanisms

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Dimethyl sulfoxide, actinomycin D (ActD), and phosphonoformate (PFA) were purchased from Sigma. Murine TNF-alpha and caspase inhibitor zVAD-fmk were purchased from Pepro Tech and Enzo Life Sciences, respectively. GSK’84043 (link) from GlaxoSmithKline has been described before. MLKL inhibitor necrosulfonamide (NSA) was purchased from Calbiochem. Immunoblotting and immunoprecipitation (IP) were performed as previously described13 (link). For non-reducing gel analysis, lysates were prepared in the absence of dithiothreitol. The following antibodies were used in cell death assays, immunoblot (IB), and IP analyses: mouse anti-mouse IFNα/β receptor 1 antibody (clone MAR1-5A3, BD Pharmingen); mouse anti-ZBP1 (clone Zippy-1, AG-20B-0010); rabbit anti-MLKL (phospho S345) (ab196436, Abcam); rat anti-MLKL (MABC604, Millipore); mouse anti-ICP0 (sc-53070, Santa Cruz); mouse anti-FLAG (clone M2, Sigma); anti-myc (clone 9E10, Santa Cruz Biotech); mouse anti-β-actin (clone AC-74, Sigma-Aldrich); rabbit anti-RIPK3 (2283, ProSci); and goat anti-RIPK3 (sc-47364, Santa Cruz).
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3

Antibody Panel for Protein Analysis

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Anti-WWP2, anti-PPM1G, anti-HA (all from Bethyl Laboratories), anti-WWP1 (Abnova), antiubiquitin (anti-Ub) (Millipore), anti-MBP (New England Bio Labs), anti-Myc clone 9E10 (Santa Cruz Biotechnology), anti-Flag, anti-GST, antiactin, and antitubulin (Sigma) antibodies were used in this study.
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4

Protein Immunodetection and Analysis Protocol

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The following antibodies were used in this study: anti-Girdin (R&D Systems, Minneapolis, MN, #AF5345, for WB and IP), anti-4F2hc (H300, Santa Cruz Biotechnology, Santa Cruz, CA, for WB, clone MEM-108, Biolegend [#315602] for IP, and mouse monoclonal anti-4F2hc [clone HBJ 127] for IF), anti-glutathione S-transferase (GST) (Santa Cruz Biotechnology, #sc-459), anti-Myc (clone 9E10, Santa Cruz Biotechnology), anti-poly-histidine (clone HIS-1, Sigma, St. Louis, MO), anti-Flag (clone M2, Sigma), anti-β-actin (clone AC-74, Sigma), normal mouse IgG (Millipore, Milford, MA, #12–371), and normal sheep IgG (Millipore, #12–515). Antibodies to pS6K (Thr389) (#9205), S6K (#9202), S6 (#2217), pS6 (Ser240/244) (#2215), MAPK (#9102), pMAPK (Thr202/Tyr204) (#9106), Lamp1 (#9109), mTOR (#2983), and LC3B (#2775) were purchased from Cell Signaling Technology (Danvers, MA). Flag M2 affinity gel, adenosine 5′-triphosphate (ATP), and amino acids were purchased from Sigma. Phos-tag Acrylamide (Wako, Saitama, Japan) was used for the generation of the Phos-tag gel to analyze protein phosphorylation in cells.
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5

Antibody Panel for Protein Analysis

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Anti-PHLPP1 (A300-660A from Bethyl Laboratories and 07-1341 from Millipore), anti-SGT1 (A302-944A from Bethyl Laboratories and Ab30931 from Abcam), anti-RNF41 (A300-048A from Bethyl Laboratories), anti-CENP-A (Ab13939 from Abcam), anti-CENP-E (Ab5093 from Abcam), anti-HEC1 (Ab3613 from Abcam) anti-Myc, clone 9E10 (SC-40 from Santa Cruz Biotechnology), anti-histone H3 (05928 from Millipore), anti-γ-tubulin (T5326 from Sigma), anti-α-tubulin (T6074 from Sigma), anti-FLAG (F3165 from Sigma), anti-actin (A5441 from Sigma), anti-HA (A190-108A from Bethyl Laboratories), and anti-ubiquitin (05-944 from Millipore) antibodies were used in this study.
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6

Yeast Rad52 and Rad51 Interaction Analysis

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Single colonies of yeast strains expressing Rad52-FLAG or HsRAD52-FLAG from genomically integrated fusion genes, and Rad51-MYC, Rad52-MYC or HsRAD52-MYC from fusion genes on plasmids containing the appropriate combination of tagged alleles were used to inoculate cultures of synthetic complete medium lacking uracil and grown overnight. The overnight cultures were used to inoculate YPD cultures that were grown to mid-log at 30°C. Whole cell extracts were prepared by silica bead disruption and pre-cleared by the addition of pre-blocked protein A/G agarose beads (Pierce Thermo-Fisher Scientific, Waltham, MA, USA). Pre-cleared extracts were mixed with either anti-FLAG M2 antibody (Sigma-Aldrich, St. Louis, MO, USA) or anti-MYC clone 9E10 (Santa Cruz Biotechnology, Dallas, TX, USA), followed by the addition of pre-blocked protein A/G beads. Immunoprecipitates were eluted from the beads and loaded onto acrylamide gels, the proteins separated by electrophoresis and then electrophoretically transferred to nylon. Protein signals were revealed using either a HRP-conjugated anti-FLAG antibody, or the mouse anti-MYC clone 9E10 primary antibody and HRP-conjugated goat anti-mouse secondary antibody as described previously.
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7

Antibody Detection and Quantification

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The following antibodies were used for Western blots (WB), immunofluorescence (IF), and Filter trap (FT): anti‐DYKDDDDK(FLAG) Tag (Cell Signaling #2368S) WB 1/1,000, anti‐myc clone 9E10 (Santa Cruz) WB 1/1,000, IF 1/100, anti‐HA Tag clone 3F10 (Roche) WB 1/1,000, IF 1/100, anti‐GFP(B‐2) (Santa Cruz) WB 1/500, FT 1/500, anti‐beta‐actin (Sigma‐Aldrich) WB 1/1,000, FT 1/1,000, anti‐EXOSC10 (ATLAS ANTIBODIES) WB 1/500, IF 1/2,000, anti‐DIS3 (Proteintech) WB1/2,000, anti‐DIS3L (Santa Cruz) WB 1/500, anti‐GAPDH (Proteintech) WB 1/20,000, anti‐HDAC1 (Proteintech) 1/1,000, anti‐PR (Proteintech) WB 1/500, FT 1/500, anti‐GR (Proteintech) WB 1/1,000, FT 1/1,000.
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8

Comprehensive Antibody Panel for Research

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anti-FLAG M2 (Sigma, F1804), anti-HA.11 (BioLegend, 901501), anti-Myc (clone 9E10, Santa Cruz Biotechnology, sc-40), anti-GST (Yeasen, 30902ES60), anti-NRP1 (Cell Signaling Technology, #3725), anti-NRP2 (Cell Signaling Technology, #3366), anti-EGLN3 (Novus, NB100–303), anti-Erk3 (Santa Cruz Biotechnology, sc-365234), anti-arginase1 (Cell Signaling Technology, #9819), anti-α-tubulin (Sigma, T6074), anti-β-actin (Yeasen, 30101ES60), anti-GAPDH (Immunoway, YM3029), anti-CD31 (Abcam, ab28364), anti-Mac3 (BD Phmarmingen, 550292), anti-CD8 (InVitrogen, #14–0081–82), anti-F4/80 (Abcam, ab6640), anti-CD25 (Servicebrio, GB11612), anti-VEGF (Novus Biologicals, NB100–664), anti-PCNA (Servicebrio, GB11010), anti-cleaved caspase-3 (Cell Signaling Technology, #9661), anti-ubiquitin (Santa Cruz Biotechnology, sc-8017), anti-MMP2 (Abcam, ab37150), anti-phospho-IкBα (Cell Signaling Technology, #2859), anti-iNOS (Cell Signaling Technology, #2982), anti-p53 (Santa Cruz Biotechnology, sc-126), anti-LAMP2 (Santa Cruz Biotechnology, sc-18822), anti-p16 (Santa Cruz Biotechnology, sc-1661), anti-p21 (Santa Cruz Biotechnology, sc-817), normal mouse IgG1 (Santa Cruz Biotechnology, sc-3877), and anti-mouse IgG(H + L) (Jackson ImmunoResearch, 715-585-151).
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