The largest database of trusted experimental protocols

Hepes koh

Manufactured by Promega

HEPES-KOH is a buffering agent used in biochemical applications to maintain a stable pH environment. It is commonly used in cell culture, enzyme activity assays, and various other laboratory procedures that require a well-controlled pH range.

Automatically generated - may contain errors

2 protocols using hepes koh

1

Ribosome Initiation Complex Purification

Check if the same lab product or an alternative is used in the 5 most similar protocols
In vitro translation extracts were made from human 293T cells as described23 (link). Lysates were nuclease-treated with 18 gel U/μl micrococcal nuclease (NEB M0247S) in the presence of 0.7 mM CaCl2 for 10 min at 25 °C, and the digestion was stopped by addition of 2.24 mM EGTA. Each translation reaction contained 50% in vitro translation lysate (from 293T cells) and buffer to make the final reaction 0.84 mM ATP, 0.21 mM GTP, 21 mM creatine phosphate (Roche), 45 U/ml creatine phosphokinase (Roche), 10 mM HEPES-KOH, pH 7.6, 2 mM DTT, 8 mM amino acids (Promega), 255 mM spermidine, 1 U/ml murine RNase inhibitor (NEB), and mRNA-specific concentrations of Mg(OAc)2 and KOAc. For 48S ribosome subunit initiation complex purification from in vitro translation reactions, reactions were incubated in the presence of GMP-PNP for 20 min at 30 °C and centrifuged for 6 min at 12 000 × g at 4 °C. Lysates were purified by size-exclusion chromatography through a 1 ml column packed with Sephacryl S-400 gel filtration resin (GE Healthcare) and the eluant centrifuged through a 10–25% (w/v) sucrose gradient by centrifugation for 5 h at 36 000 rpm at 4 °C in a Beckman SW40 Ti rotor. Fractions were collected from the gradient and RNA purified by phenol–chloroform extraction and ethanol precipitation, and protein precipitated with trichloroacetic acid.
+ Open protocol
+ Expand
2

Evaluating IRES Activity Regulation by KHSRP

Check if the same lab product or an alternative is used in the 5 most similar protocols
For the in vivo IRES activity assay, pFLAG-CMV2 vector, pFLAG-CMV2-KHSRP or KHSRP (K109, 121, 122R) plasmids were transfected to RD shKHSRP knockdown cells. After 48 h post-transfection, cells were transfected with 0.5 μg EV71 replicon 3DD330A RNA, following which cells were harvested using 5× cell culture lysis buffer (Promega), and then assayed for Firefly luciferase (FLuc) activity. The in vitro IRES activity assay was performed in a final volume of 25 μl containing 0.25 μg RNA, 250 ng KHSRP proteins, 60% volume of RD shKHSRP knockdown cell translation extracts, translation mixture (10 mM creatine phosphate, 50 μg/ml creatine phosphokinase, 79 mM KOAc, 0.5 mM Mg(OAc)2, 2 mM DTT, 0.02 mM hemin, 0.5 mM spermidine), 20 mM HEPES–KOH (pH 7.6), 20 μM amino acid mixture (Promega), 0.4 mM ATP (Promega) and RNase inhibitor. The mixtures were incubated at 30°C for 90 min and measured for FLuc activity by the Luciferase Assay System (Promega).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!