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26 protocols using ds ri2 microscope

1

Histological and Ultrastructural Analysis of Liver Tissue

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A small part of the liver tissue was fixed with 10% neutral buffer formalin solution for 24 h, and then dehydrated by different grades of ethanol (80%, 95% and 100%), transparent in xylene and covered with paraffin. A 0.2 μm slice was then cut from paraffin-embedded tissue using a slicer (Leica Instruments GmbH, Wetzlar, Germany). The slides were prepared by dewaxing, stained with H&E, and sealed with neutral gum. Microphotographs were obtained using a Nikon DS-Ri2 microscope (Nikon Corporation, Tokyo, Japan).
Another part of the liver tissue was fixed with 2.5% glutaraldehyde and 4% paraformaldehyde at 4 °C for 2 h, rinsed with 0.1 M phosphate buffer, and then fixed with 1% osmic acid at 4 °C for 2 h. After rinsing with 0.1 M phosphate buffer, different grades of acetone (30%, 50%, 70%, 90% and 100%) were dehydrated. After embedding, sections were stained with uranium acetate and lead citrate, and finally observed using a JEM-1400 PLUS transmission electron microscope (Japan Electronics Corporation, Tokyo, Japan).
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2

Immunofluorescence Staining of Brain Sections

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Immunofluorescence staining was performed as previously described.34 Briefly, frozen brain sections (8‐μm thickness) were made and then permeabilized and blocked in 5% donkey serum consisting of 0.3% Triton X‐100 for 1 h at room temperature. Primary antibodies were diluted by blocking buffer and incubated with sections for 16 h at 4°C. After being incubated with secondary antibodies, nuclei were stained by DAPI (4,6‐diamidino‐2‐phenylindole) and observed by Nikon DS‐Ri2 microscope (Nikon).
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3

TUNEL Assay for Cell Death

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TUNEL analysis was performed using an In Situ Cell Death Detection Kit, POD (Roche, Basel, Switzerland) according to manufacturer's instructions. Briefly, brain sections were hydrated via deionized water and then permeabilized by 0.3% Triton X‐100 in TBS. TdT and fluorescein‐labeled dUTP were mixed to form the TUNEL staining solution, which was then incubated with brain slides for 20 min at 37°C in the dark. The results were observed via Nikon DS‐Ri2 microscope (Nikon, Tokyo, Japan).
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4

Boyden Chamber Cell Migration Assay

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The Boyden chamber migration assay has been described in detail previously (Seznec et al., 2011 (link)). In brief, 50,000 cells were seeded on an 8μm membrane (Greiner, Kremsmünster, Austria) and let migrate over 48h. 10% fetal calf serum (FCS) was applied into the lower chamber as a chemoattractant. The migration was analyzed 24h and 48h after start of the experiment by fixing the cells, removing the non-migrating cells, staining the migrated cells with Hoechst and counting the migrated cells on five regions of interest (ROIs) per membrane at the Nikon DS Ri2 microscope (Nikon, Tokyo, Japan) with 10x magnification objective. Two membranes per biological replicate and at least four biological replicates were taken for statistical analysis. Migration index was calculated as fold change (fc) between the control cells versus overexpression, knockdown or rescue cells relative to 1.
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5

Fluoro-Jade C Staining for Neuronal Degeneration

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We detected neuronal degeneration, a characteristic pathological change of seizure, by FJC staining.35 Ready‐to‐Dilute (RTD)™ Fluoro‐Jade® C Staining Kit (Biosensis) was chosen for neuronal degeneration detection and used according to the manufacturer's instructions. Briefly, frozen sections were rehydrated and permeabilization via ethanol and sodium hydroxide for 5 min. After potassium permanganate incubation for 7 min to reduce fluorescent background, FJC staining solution was added to sections for 10 min and incubated in the dark. The slides were then cover slipped with DPX and observed via Nikon DS‐Ri2 microscope (Nikon).
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6

Histological Analysis of Hepatopancreas

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Samples of hepatopancreas were fixed in Carnoy’s Fluid for 24 h, dehydrated in gradient ethanol (70%, 85%, 95%, and 100%), made transparent in xylene, embedded in paraffin, and sliced into 8 μm sections. After dewaxing and rehydrating, the slices were stained with a hematoxylin and eosin staining kit (Beyotime, Shanghai, China). The stained sections were observed and photographed with a Nikon DS-Ri2 microscope (Nikon, Tokyo, Japan).
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7

ERCC8 Expression in Mouse Tissues

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ERCC8 protein immunofluorescence staining was performed on mouse eyeballs, as described in prior research,23 (link) and then examined under a Nikon DS-Ri2 microscope (Nikon, Tokyo, Japan). Total RNA was extracted from the heart, liver, lungs, cornea, lens, conjunctiva, and retina tissues of a mouse. PrimeScript RT Reagent Kit (Perfect Real Time) was used to synthesize cDNA from RNA. The expression of the ERCC8 gene was measured by quantitative real-time polymerase chain reaction (qRT-PCR) and normalized to glyceraldehyde-3-phosphate dehydrogenase (GAPDH).
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8

Cornea and Conjunctiva Tissue Fixation

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The cornea and conjunctiva were fixed in the Davison’s fixative solution (Sigma-Aldrich, St. Louis, MO, USA) for 24 h. The samples were washed in tap water for 4 h, and paraffin embedding was performed with a tissue processing machine (Leica TP 1020, Wetzlar, Germany). After that, they were cut to 5-μm using a microtome (Leica, Wetzlar, Germany), and then stainings were performed. All slide figures were taken with a DS-Ri2 microscope (Nikon, Tokyo, Japan).
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9

Immunohistochemical Analysis of CLEC1B Expression

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The human HCC TMA was obtained from a commercialized company (http://www.cancercell.com.cn/). Immunohistochemical detection of CLEC1B expression was performed according to our previously published literature [34 ]. Briefly, the TMA slides were placed in an oven at 65 °C for 2 h, dewaxing and dehydration with xylene and graded ethanol, respectively. After antigen retrieval, 1% bovine serum albumin was used to block the nonspecific binding. Then, the slides were incubated with anti–CLEC1B rabbit polyclonal antibody (cat#DF14376, Affinity Biosciences, AUS) overnight at 4 ℃. After washing with PBS for 3 times, the slide was incubated with biotin–labeled secondary antibodies. Finally, slides were visualized by the DAB staining kit, and the Nikon DS-Ri2 microscope (Japan) was applied for image capture. The Image J software was used for the quantization of protein expression levels.
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10

Cross-Polarized Imaging of CNC and CNC/Lignin Films

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Cross-polarized images of CNC and
CNC/lignin films were taken using a Nikon (Melville, NY) Eclipse 80i
microscope with an LU Plan Fluor 4×/0.13NA Nikon objective lens
and a Nikon DS-Ri2 microscope camera. Each film was placed between
the cross-polarizers, and images were taken in direction oriented
at 0 and 45° to the polarization axis.
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