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8 protocols using pefabloc sc plus

1

Kidney Drp1 Phosphorylation Immunoblot

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Kidney cortical tissue was prepared for immunoblot analysis with antibodies against phosphorylated and total Drp1. Kidney cortex samples were homogenized in extraction buffer containing 50 mM HEPES, pH7.4, 150 mM NaCl, 0.5% Triton X-100, 0.025 mM ZnCl2, 0.1 mM Pefabloc SC Plus (Roche, Basel, Switzerland), EDTA-free protease inhibitor cocktail tablet (Roche, Basel, Switzerland), and phosphatase inhibitor cocktail (Sigma-Aldrich, St. Louis, MO, USA). Protein concentration was determined using the Micro BCA Protein Assay Kit (ThermoFisher Scientific, Waltham, MA, USA).
Western blot was performed by separating 15 µg of total protein in 7% SDS-polyacrylamide gels and transferring it onto PVDF membranes (Immobilon-P Millipore, Burlington, MA, USA). Membranes were incubated in skimmed milk blocking solution (5%) for 1 h and incubated overnight at 4 °C with galectin-3 (1:500; 126701, Biolegend, San Diego, CA, USA) in 2.5% skimmed milk. HRP-conjugated anti-mouse IgG antibody was used as secondary antibody. β-Actin antibody (1:20,000; BS1003, Bioworld, Dublin, Ireland) was used as loading control.
Proteins were detected in films (AGFA CURIX, Mortsel, Belgium) after 3-min incubation with Clarity Western ECL Substrate (Bio-Rad, Hercules, CA, USA). Protein bands were quantified by densitometry with the ImageJ software.
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2

Western Blot Analysis of Cell Signaling Proteins

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Cells were lysed in NP-40 lysis buffer (Novex/Life Technologies) and a cocktail of protease inhibitors (cOmplete ULTRA Tablets, Roche) and Pefabloc SC PLUS (Roche). The insoluble material was sedimented by centrifugation (12,000g, 10 min, 4 °C), and the supernatants were collected and frozen at −80 °C. Protein content was determined using a BCA Protein Assay kit (Pierce, Rockford, IL). Equivalent amounts of protein were electrophoresed on 4–12% Bis-Tris gels (Life Technologies) and transferred to polyvinylidene difluoride membranes (Life Technologies). Membranes were blocked and incubated with primary antibodies (1:1,000; β-catenin: #610154, BD Biosciences; GAPDH: #ab37168, Abcam; β-actin: #13E5; LRP6, #2560; pLRP6, #S1490; SAPK/JNK: #9252S; pSAPK/JNK (Thr183/Tyr185), #9255S; cJUN: #9165S; pcJUN (Ser73) #9164S, Cell Signaling Technology, Inc., Danvers, MA) overnight, followed by incubation with horseradish peroxidase (HRP)-linked secondary antibodies (#7074S and #7076S, 1:1,000, Cell Signaling Technology). The protein bands were visualized with ImmunoStar Western C (Bio-Rad, Hercules, CA) and the ChemiDoc XRS+ System (Bio-Rad).
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3

Quantification of Kidney ACE2 Activity

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Kidney cortex samples were homogenized in a buffer consisting of 50 mM HEPES, pH 7.4, 150 mM NaCl, 0.5% Triton X-100, 0.025 mM ZnCl2, and 0.1 mM Pefabloc SC Plus (Roche) and EDTA-free protease inhibitor cocktail tablet (Roche) and clarified by centrifugation at 14,000×g for 10 min at 4°C. After measuring protein concentration by Micro BCA assay kit (Thermo Scientific), tissue samples were diluted in a buffer containing 100 mM Tris-HCl, 600 mM NaCl, 10 µM ZnCl2, pH 7.5 and 100 µM captopril, 5 µM amastatin, 5 µM bestatin (all from Sigma-Aldrich), and 10 µM Z-Pro-prolinal (Enzo Life Sciences). To each well, 40 µl of a diluted tissue sample (0.5 µg of total renal protein) was added, along with 10 µl of buffer (with or without an specific ACE2 inhibitor, MLN-4760), and the reaction was initiated by the addition of 50 µl of the substrate (5 µmol/l, final concentration). Kidney cortex ACE2 activity was determined after 4-hour incubation at 37°C. The plates were read as described above. Experiments were carried out in duplicate for each data point. Results after subtraction of the inhibition value were expressed as RFU (Relative Fluorescent Units) per µg of protein and per hour (RFU/µg/hr).
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4

Cardiac Tissue Proteomics Protocol

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The heart was carefully dissected out after sacrifice and immediately frozen in liquid nitrogen and stored at -80 °C. Frozen tissues were homogenized in lysis buffer [30 mM Tris-HCl, 7 M urea, 2 M thiourea, 4% w/v CHAPS, and cocktails of protease inhibitors (Complete Mini, EDTA-free and Pefabloc SC PLUS; Roche, Basel, Switzerland), pH 8.5]. After incubation for 60 min on ice, homogenates were centrifuged at 30,000 × g for 30 min at 4 °C and the supernatant was collected. The protein concentration in the supernatant was determined by the Bradford assay (Bio-Rad Laboratories, Hercules, CA), using bovine serum albumin as a standard.
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5

Comprehensive Tissue Characterization of Mice

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At termination of the in vivo study, after being fasted for 18 h to induce a general basal metabolic state, mice were sacrificed under ketamine/xylazine anesthesia. Nose-anus length, right femur length, body weight and glucose levels were assessed at dissection time. Liver, pancreas, spleen, brain, m. quadriceps femoris, thymus, adrenals, femur, testis, perigonadal fat, interscapular fat, and perirenal fat were weighed and fixed in formalin and/or liquid nitrogen. Formalin-fixed organs were stored at 4°C (except femur at room temperature), and after 24 h transferred to 70% alcohol. Blood samples were collected at the time of dissection by orbital puncture, treated with Pefabloc SC PLUS (Roche, Mannheim, Germany) to neutralize proteases, allowed to clot and centrifuged. Serum samples, snap-frozen organs and adipose tissue were stored at −80°C until further analysis. All F1 animals at this stage were fed a HFD so the measurements performed were under HFD condition.
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6

Kidney Protein Extraction and Quantification

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Total kidney protein was extracted from kidney cortex and was homogenized in lysis buffer (50 mM HEPES pH 7.4, 150 mM NaCl, 0.5% Triton X-100, 0.025 mM ZnCl2, 0.1 mM Pefabloc SC Plus (11873601001, Roche, Ludwigsburg, Germany) and 1:7 dilution of EDTA-free protease inhibitor cocktail (11836170001, Roche, Ludwigsburg, Germany). Afterwards, the samples were centrifuged (16000RCF, 60 min, 4 °C) and the supernatant was recovered. Protein concentration was measured using the BCA protein assay kit (23225, ThermoFisher Scientific, Waltham, MA, USA) following the manufacturer’s protocol. These protein extracts were employed for ACE and ACE2 activity measurement.
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7

Protein Extraction and Western Blotting

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Total protein extracts were prepared by grinding leaf material in protein extraction buffer (20% (v/v) glycerol, 50 mM Tris-HCl pH 7.5, 2 mM EDTA, 300 mM NaCl, 0.6 mg/ml Pefabloc SC plus (Roche, Basel, Switzerland), 2% (w/v) polyclar-AT polyvinylpolypyrrolidone (Serva, Heidelberg, Germany), 10 mM dithiothreitol and 0.1% (v/v) Tween20) on ice. For Western blotting, proteins were separated by SDS-PAGE on NuPage 12% Bis-Tris gels (Invitrogen) and blotted to 0.45 μm polyvinylidene difluoride membrane (Thermo Scientific). Before immunodetection we blocked the membranes for 1h at room temperature in 5% (w/v) powder milk in PBS with 0.1% Tween20. For immunodetection rabbit α-GFP (Abcam, Cambridge, United Kingdom) with horseradish peroxidase-conjugated donkey α-rabbit (Jackson ImmunoResearch, Ely, United Kingdom) or horseradish peroxidase-conjugated rat α-HA (Roche) were used.
Peroxidase activity was visualized using SuperSignal West Femto or Dura substrate (Thermo Scientific) and imaging of the luminescence with G:BOX gel documentation system (Syngene, United Kingdom).
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8

Kidney Cortex Protein Extraction

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Kidney cortex samples were homogenized in a buffer consisting of 50 mM HEPES, pH 7.4, 150 mM NaCl, 0.5% Triton X-100, 0.025 mM ZnCl 2 , 0.1 mM Pefabloc SC Plus (Roche), and EDTA-free protease inhibitor cocktail tablet (Roche). Protein extracts were clarified by centrifugation at 14,000 x g for 10 min at 4 °C. Protein concentration was determined using the BCA Protein Assay Kit (Thermo Scientific Pierce ® ).
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