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4 protocols using synaptobrevin 2

1

Immunohistochemistry of Synaptic Proteins

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Immunohistochemistry was carried out as described in detail previously (Singer et al., 2016 (link)). Antibodies against C-terminal-binding protein 2 (CtBP2)/RIBEYE (rabbit, diluted 1:750; ARP American Research Products, Inc.™, Waltham, MA, USA) to detect ribbons (Khimich et al., 2005 (link)), neurofilament 200 (NF-200, mouse, 1:3,000; Sigma-Adlrich, St. Louis, MO, USA), parvalbumin (PV, rabbit, diluted 1:2,000; Abcam, Cambridge, UK), Synaptobrevin 2 (mouse, diluted 1:200; Synaptic Systems, GmbH, Berlin, Germany), and desmin (mouse, diluted 1:100; Abcam, Cambridge, UK) were used. Primary antibodies were detected using appropriate Cy3 (1:1,500, Jackson Immuno Research Laboratories, West Grove, PA, USA) or Alexa488 (1:500, Invitrogen Molecular Probes, Paisley, UK) secondary antibodies.
All samples were viewed as previously described (Zampini et al., 2010 (link)) using an Olympus BX61 microscope (Olympus, Hamburg, Germany), equipped with epifluorescence illumination and analyzed with CellSens Dimension software (OSIS GmbH, Münster, Germany). To increase spatial resolution, the slices were imaged over a distance of 15 μm within an image stack along the z-axis (z-stack), followed by 3-dimensional deconvolution using CellSens Dimension's built-in algorithm.
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2

Comprehensive Neuronal Marker Antibody Panel

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CSPα (R807, gift from Dr. Thomas C. Südhof), GAPDH (G-9, Santa Cruz), MAP2 (AB5622, Millipore; M1406, Sigma), myc (9E10, deposited to the DSHB by Bishop, J.M.; C3956, Sigma), VDAC1 (N152B/23, Neuromab), Na,K-ATPase (a5, deposited to the DSHB by Fambrough, D.M.), NF-165 (2H3, deposited to the DSHB by Jessell, T.M./Dodd, J.), SNAP-25 (SMI81, Sternberger Monoclonals), synapsin (E028, gift from Dr. Thomas C. Südhof), synaptobrevin-2 (69.1, Synaptic Systems), synaptophysin (clone 7.2, Synaptic Systems), αSyn (clone 42, BD Biosystems; clone 4D6, Abcam), βSyn (sc-136452, Santa Cruz), γSyn (SK23 (Ninkina et al., 2003 (link))), pS129 αSyn (pSyn #64, FUJIFILM Wako), SV2 (P915, gift from Dr. Thomas C. Südhof; SV2, deposited to the DSHB by Buckley, K.M.), α-tubulin (12G10, DSHB), Tuj1 (2G10, Santa Cruz), and tyrosine hydroxylase (MAB318, Millipore).
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Comprehensive Neuronal Marker Antibody Panel

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CSPα (R807, gift from Dr. Thomas C. Südhof), GAPDH (G-9, Santa Cruz), MAP2 (AB5622, Millipore; M1406, Sigma), myc (9E10, deposited to the DSHB by Bishop, J.M.; C3956, Sigma), VDAC1 (N152B/23, Neuromab), Na,K-ATPase (a5, deposited to the DSHB by Fambrough, D.M.), NF-165 (2H3, deposited to the DSHB by Jessell, T.M./Dodd, J.), SNAP-25 (SMI81, Sternberger Monoclonals), synapsin (E028, gift from Dr. Thomas C. Südhof), synaptobrevin-2 (69.1, Synaptic Systems), synaptophysin (clone 7.2, Synaptic Systems), αSyn (clone 42, BD Biosystems; clone 4D6, Abcam), βSyn (sc-136452, Santa Cruz), γSyn (SK23 (Ninkina et al., 2003 (link))), pS129 αSyn (pSyn #64, FUJIFILM Wako), SV2 (P915, gift from Dr. Thomas C. Südhof; SV2, deposited to the DSHB by Buckley, K.M.), α-tubulin (12G10, DSHB), Tuj1 (2G10, Santa Cruz), and tyrosine hydroxylase (MAB318, Millipore).
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4

Quantitative Immunoblotting of Synaptic Proteins

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On DIV6, 12, 16, or 20, cells were collected in 125µL PBS and 125µL Laemmli sample buffer (BioRad). 15µL of cell lysate was run on an SDS/PAGE gel and then transferred to a nitrocellulose membrane using the Trans-Blot Turbo transfer system (BioRad). Primary antibodies were used at the following concentrations: GAPDH (14C10; Cell Signaling) 1:50,000; synaptobrevin2 (104 211; Synaptic Systems) 1:5,000; synaptotagmin1 (105 011; Synaptic Systems) 1:5,000; synapsin1 (106 103; Synaptic Systems) 1:2,000; Vti1a (611220; BD Biosciences) 1:500. After incubation in primary antibodies at 4°C overnight, membranes were incubated in secondary antibodies at the following concentrations: GAPDH 1:10,000 (anti-rabbit); synaptobrevin2 1:5,000 (anti-mouse); synaptotagmin1 1:5,000 (anti-mouse); synapsin1 1:5,000 (anti-rabbit); Vti1a 1:5,000 (anit-mouse). Protein bands were detected using ECL and exposure to film. Quantification was performed using ImageJ to detect protein band intensities. Values were normalized to GAPDH before comparison.
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