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7 protocols using anti msh2

1

Co-IP and Western Blot of JAK2-Related Proteins

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For Co-IP of endogenous proteins, anti-JAK2 (Millipore, 06-255-I¸1:100), anti-MSH2 (Cell Signaling Technology (CST, MA), 2017S, 1:200), anti-MSH6 (Becton Dickinson (BD, NJ), 610918, 1:100), anti-EZH2 (CST, MA, 5246T, 1:200) antibodies were used. For western blot, anti-JAK2 (Millipore, 06-255-I, 1:1000 and Abcam, CA, ab108596, 1:1000 ), anti-p-JAK2 (Y1007/1008, 1:1000) (Millipore, MA, 07-606), anti-p-STAT3 (Y705) (CST, MA, 9145S, 1:1000), anti-LaminB (Santa Cruz (SC, CA), sc-6216, 1:1000), anti-GAPDH (CST, MA, 5174, 1:1000), anti-MSH2 (CST, MA, 2017S, 1:1000), anti-MSH6 (BD, 610918, 1:1000), anti-DNMT1 (Sigma, MO, D4692, 1:1000), anti-EZH2 (CST, MA, 3147S, 1:1000), anti-STAT3 (CST, MA, 9139, 1:1000), anti-γH2AX (CST, MA, 9718, 1:1000), anti-H3K27me3 (CST, MA, 9733, 1:1000), anti-H3 (CST, MA, 9751, 1:3000), anti-EZH2 (CST, MA, 3147S, 1:1000), anti-SUZ12 (CST, MA, 3737, 1:1000), anti-EED (Sigma, MO, GW10896A, 1:500) antibodies were used. For immunofluorescence, anti-JAK2 (Abcam, CA, ab108596, 1:100), anti-DNMT1 (SC, CA, sc-20701, 1:100), anti-γH2AX (Millipore, NJ, 05-636, 1:100), secondary Alexa Conjugate (CST, MA, mouse 8890, 1:500 and rabbit 8889, 1:1000) were used.
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2

Western Blot Quantification of Protein Biomarkers

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Cells were collected by centrifugation for GS-lines and by scraping for adherent cells. Westerns were done as described [23 (link)] and probed with respective antibodies: anti-α-Tubulin (Sigma, T5168, 1:10,000), anti- β-Actin (Bioconcept, 8H10D10. 1:10,000), anti-MGMT (R&D systems, AF3794-SP, 1:4000), anti-MSH6 (Cell Signaling, #5424 S, 1:4000), anti-MSH2 (Cell Signaling, #2017S, 1:4000). Membranes were washed 5 min x3 in TBS-T at RT, followed by incubation at RT for 1 h with the following secondary antibodies (according to primary antibody specifics): anti-rabbit (Promega, W4011, 1:5000), anti-mouse (Thermofisher, 31430, 1:5000), anti-goat (Thermofisher, 31402, 1:5000).
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3

Western Blot Analysis of DNA Repair Proteins

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Western blot analysis was performed as previously described.36 (link) The following antibodies were used: anti-MLH1, anti-MSH2, anti-MSH6, anti-PMS2, anti-caspase-3, anti-cleaved caspase-3, anti-PARP, anti-cleaved PARP, anti-BAD, anti-pBAD (S112), anti-Bcl2, anti-Bax (Cell Signaling Technology), and anti-actin (Sigma).
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4

Profiling DNA Damage Response Proteins

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Anti‐tyrosine‐701‐phosphorylated‐STAT1 (#9167), anti‐STAT3 (#4904), anti‐MLH1 (#4256), anti‐ATM (#2873), anti‐serine‐1981‐phosphorylated‐ATM (#5883), anti‐CHK2 (#6334), anti‐threonine‐68‐phosphorylated‐CHK2 (#2197), anti‐ATR (#13934), anti‐serine‐428‐phosphorylated‐ATR (#2853), anti‐CHK1 (#2360), anti‐serine‐345‐phosphorylated‐CHK1, anti‐HSP90 (#4874), anti‐serine‐139‐phosphorylated‐H2AX (#9718), anti‐c‐ABL(#2862), anti‐p53 (#9282), anti‐serine‐15‐phosphorylated‐p53 (#9284) and anti‐MSH2 (#2017) were purchased from Cell Signaling Technology (Ozyme, Montigny‐le‐Bretonneux, France). Anti‐STAT1α (#SC‐345), anti‐STAT1α and STAT1β isoforms (#SC‐346) and anti‐α‐actin (#SC‐1616) were from Santa Cruz/Tebu‐Bio (Le‐Perray‐en‐Yvelynes, France). Anti‐α‐tubulin (#T8203) was from Sigma‐Aldrich (Saint‐Quentin‐Fallavier, France).
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5

Western Blot Analysis of Histone and DNA Repair Proteins

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Cells were lysed in RIPA lysis buffer (ThermoFisher), supplemented with PhosSTOP and cOmplete inhibitors (Sigma-Aldrich). Protein concentrations were measured utilizing the Pierce BCA Protein Assay (ThermoFisher). Samples were resolved on Bolt 4–12% Bis-Tris gels (ThermoFisher) and transferred to 0.2 µm nitrocellulose. Membranes were blocked in a 5% BSA/TBS-T solution for 1 h and then incubated with the following primary antibodies in blocking solution for 24 h at 4 °C: anti-GAPDH (1:2500), Cell Signaling, Cat#97166S), anti-β-Actin (1:5000, Cell Signaling, Cat#3700S), Histone H3 (acetyl K9, K14, K18, K23, K27) (1:1000, Abcam, Cat#ab47915), anti-PMS2 (1:1000, Abcam,Cat#ab11068), anti-MSH2 (1:1000, Cell Signaling, Cat#2017S), or anti-cleaved PARP (1:500, Cell Signaling, Cat#9541S). Secondary antibodies were used at 1:10,000 (Li-Cor IRDye 800CW Donkey anti-Mouse IgG and IRDye 680RD Goat anti-Rabbit IgG, Cat#926-32212 and Cat#926-68071, respectively).
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6

Coimmunoprecipitation and Biotin-based Purification

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All coimmunoprecipitation and immunoprecipitation experiments were performed as previously described using 1000 μg of lysate in Cell Lytic M (Sigma Aldrich, Oakville, Ontario, Canada).4 (link) No-antibody controls were included, although not always shown. Biotin-based protein purification was performed as previously described using 500 μg of lysate in RIPA buffer.18 (link) These experiments were repeated at least three times. The following antibodies were used: anti-MSH2 (EMD, Billerica, MA, USA, IP/co-IP, catalog number NA27), anti-MSH6 (BD Biosciences, San Jose, CA, USA, catalog number 610919), anti-MSH2, anti-phospho-tyrosine, anti-ALK, anti-total caspase 3 (Cell Signaling Technologies, Danvers, MA, USA, catalog numbers 2017, 9416, 3633 and 14220, respectively) and anti-β-actin (Santa Cruz Biotechnology, Dallas, TX, USA; sc-47778).
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7

Western Blot Analysis of DNA Mismatch Repair Proteins

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Cell pellets were lysed in 20 mM Tris (pH 8), 200 mM NaCl, 1 mM EDTA, 0.5% (v/v) NP40, 10% glycerol, supplemented with protease inhibitors. For western blotting, lysates were electrophoresed on Novex precast gels (Invitrogen) and immunoblotted using the following antibodies: anti-MSH6 (#5424), anti-MSH2 (#2017), anti-MLH1 (#4256), anti-thymidylate synthase (#9045), β-Actin (#4970), purchased from Cell Signaling. The following antibodies were also used; anti-MSH3 (sc-11441; Santa Cruz) and anti β-tubulin (T8328; Sigma). This was followed by incubation with anti-IgG-horseradish peroxidase and chemiluminescent detection (Supersignal West Pico Chemiluminescent Substrate, Pierce). Immunoblotting for β-Actin and β-tubulin were performed as loading control.
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