The largest database of trusted experimental protocols

3 protocols using d mannose 6 phosphate

1

Inhibition of Enzyme Uptake in Brain Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Uptake inhibition assays were performed in MPS IIIB fibroblasts and two brain tumor-derived cell lines, Dao Y and Es (cerebellar medulloblastoma and glioblastoma, respectively, kindly provided by Dr. J Lasky, Los Angeles Biomedical Research Institute at Harbor-UCLA, Torrance, CA). Cells were seeded in 12-well plates and grown to confluence. Culture medium was replaced with 0.5 ml of EMEM without serum prior to the addition of uptake inhibitors. 5 µg/ml recombinant human IGF-II (R&D Systems; Minneapolis, MN) or 5 mM D-mannose 6-phosphate (Sigma-Aldrich; St. Louis, MO) was applied to the cells for 10 minutes prior to applying purified rhNAGLU-IGF-II at a final concentration of 160 units/ml. Following 4 hours incubation at 37°C and 5% CO2, cells were harvested and intracellular NAGLU activity was measured as described above. The enzyme activity measured in MPS IIIB fibroblasts with rhNAGLU-IGF-II treatment alone was defined as 100% and the intracellular enzyme activity observed in the presence of inhibitor(s) was normalized to rhNAGLU-IGF-II activity. The endogenous intracellular enzyme activity measured in brain tumor-derived cell lines was defined as 100% and the enzyme uptake with or without inhibitor was normalized to this value.
+ Open protocol
+ Expand
2

Purification and Characterization of QDK-PMM1

Check if the same lab product or an alternative is used in the 5 most similar protocols
DEAE-Sepharose ff, Superdex-75, Butyl Sepharose ff, were purchased from GE Healthcare Life Sciences. Phosphoglucose isomerase from rabbit muscle, phosphomannose isomerase from E. coli, glucose 6-phosphate dehydrogenase from baker's yeast (S. cerevisiae), phosphoglucomutase from rabbit muscle, α-D-Glucose 1,6-bisphosphate potassium salt hydrate, α-D-Glucose 1-phosphate disodium salt hydrate, α-D(+)Mannose 1-phosphate sodium salt hydrate, D-Glucose 6-phosphate, D-Mannose 6-phosphate, β-Nicotinamide adenine dinucleotide phosphate sodium salt, were purchased from Sigma-Aldrich. Sypro Orange was from Invitrogen Molecular Probes. Sodium orthovanadate was from Acros Organics. Creatine phosphate disodium salt tetrahydrate was from Alfa Aesar. Clodronate ((Dichloro-phosphono-methyl)phosphonic acid) and neridronate ((6-Amino-1-hydroxyhexane-1,1-diyl)bis(phosphonic acid) were from ABIOGEN-PHARMA.
Mannose 1,6-bisphosphate was synthesized as described [18 (link)] and purified on an AG1x8 hydroxide form column by running a step gradient 0–1 M NaCl. Fractions were analyzed by 1H- and 31P-NMR spectroscopy. An internal standard (Trimethylsilylpropanoic acid) was used in order to measure the concentration. All the other reagents were of analytical grade. The ORF encoding QDK-PMM1 was obtained by de novo gene synthesis and was purchased by GeneCust, Luxemburg; it is available upon request.
+ Open protocol
+ Expand
3

Metabolite Extraction and Derivatization

Check if the same lab product or an alternative is used in the 5 most similar protocols
D-Erythrose 4-phosphate (E4P), glycolaldehyde, D-glucose 6-phosphate, D-mannose 6-phosphate, methoxyamine hydrochloride, pyridine and N-methyl-N-(trimethylsilyl) trifluoroacetamide (MSTFA) were purchased from Sigma-Aldrich (St. Louis, MO, United States). D-Allose and D-altrose were purchased from Macklin Biochemical (Shanghai, China). Other regents such as D-glucose, D-mannose, ATP, ADP, thiamine pyrophosphate (TPP), and MgCl2 were all purchased from Sangon Biotech (Shanghai, China), unless noted otherwise. Escherichia coli DH5α was used for plasmid construction and preservation. Escherichia coli BL21 (DE3) was used for protein expression. Luria-Bertani (LB) medium (10 g/L tryptone, 5 g/L yeast extract and 10 g/L NaCl) was used for E. coli cell culture and recombinant protein expression, supplemented with 50 μg/ml kanamycin or 100 μg/ml ampicillin when necessary.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!