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4 protocols using prl sv40 renilla vector

1

Luciferase Assay of EVI1 and G2DHE Variants

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The pGL3 basic vector (Promega, Madison, WI, USA) and the pRL-SV40 Renilla vector (Promega, Madison, WI, USA) were used in all luciferase assays. The pGL3 vector containing the EVI1 promoter was a gift from K. Mitani, Dokkyo Medical University School of Medicine, Kitakobayashi, Japan. Different G2DHE variants were cloned into this vector using the restriction enzymes BamHI and SalI (Table S1). The pGL3 vector containing the EVI1 promoter and full-length G2DHE was described previously [16 (link)]. Site-directed mutagenesis was carried out using the QuikChangeII XL kit (Agilent Technologies, Santa Clara, CA, USA) (Table S2). Mutated constructs were re-cloned into a fresh backbone vector. Cells were seeded at a density of 0.5 × 106 cells/mL and transiently transfected with X-tremeGENE HP DNA (Roche, Basel, Switzerland) transfection reagent according to the manufacturer’s protocol. Per 0.5 × 106 cells 100 ng of pRL-SV40 and 900 ng of the full-length G2DHE constructs were used. Equimolar amounts were used for shorter pGL3 constructs. Cells were harvested 48 h after transfection. Dual-luciferase assays were performed using the Dual-Luciferase Reporter Assay System (Promega, Madison, WI, USA) according to the manufacturer’s protocol on a Victor X3 plate reader (Perkin Elmer, Waltham, MA, USA). Luciferase signal was normalized to Renilla signal.
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2

Investigating LINC00842 Gene Regulation

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The LINC00842 gene promoter sequence containing YY1 binding site (−2000 bp to transcription start site) or its mutated forms was cloned into the pGL4.10 vector (Promega). The constructs were co-transfected with the pRL-SV40 Renilla vector (Promega) into PDAC cells. The luciferase activity was determined 48 h after transfection by a Dual-Luciferase Reporter Assay System (Promega) and normalized using Renilla luciferase activity.
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3

Characterization of G2DHE Variants Using Luciferase Assay

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The pGL3 basic vector (Promega, Madison, WI, USA) and the pRL-SV40 Renilla vector (Promega, Madison, WI, USA) were used in all luciferase assays. The pGL3 vector containing the EVI1 promoter was a gift from K. Mitani, Dokkyo Medical University School of Medicine, Kitakobayashi, Japan. Different G2DHE variants were cloned into this vector using the restriction enzymes BamHI and SalI (Table S1). The pGL3 vector containing the EVI1 promoter and full-length G2DHE was described previously.16 (link) Site-directed mutagenesis was carried out using the QuikChangeII XL kit (Agilent Technologies, Santa Clara, CA, USA) (Table S2). Mutated constructs were re-cloned into a fresh backbone vector. Cells were seeded at a density of 0.5x106 cells/mL and transiently transfected with X-tremeGENE HP DNA (Roche, Basel, Switzerland) transfection reagent according to the manufacturer’s protocol. Per 0.5x106 cells 100 ng of pRL-SV40 and 900 ng of the full-length G2DHE constructs were used. Equimolar amounts were used for shorter pGL3 constructs. Cells were harvested 48 h after transfection. Dual luciferase assays were performed using the Dual Luciferase Reporter Assay System (Promega, Madison, WI, USA) according to the manufacturer’s protocol on a Victor X3 plate reader (Perkin Elmer, Waltham, MA, USA). Luciferase signal was normalized to Renilla signal.
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4

Regulation of PD-L1 Promoter Activity

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The reporter gene constructs for PD‐L1 (−373/+328) were generated by PCR amplification. The PCR products were purified with a high PCR product purification kit (GeneJET Plasmid Miniprep kit; Thermo Fisher Scientific) and cloned into the pGL3‐basic firefly luciferase vector (Promega). The sequence of each cloned promoter region was confirmed by sequencing (Applied Biosystems 3730XL system). For reporter assays, cells were cotransfected with the firefly luciferase construct pRL‐SV40 Renilla vector (Promega) and the PD‐L1 promoter construct vector using X‐tremeGENE HP DNA Transfection Reagent (6366236001; Roche). After 6 h, cells were treated with 10 ng/ml TGF‐β (PHG9214; Fisher Scientific), 10 ng/ml IL‐1β (PHC0811; Fisher Scientific), 10 ng/ml IL‐6 (PHC0061; Fisher Scientific), 10 ng/ml EGF (PHG0311, Fisher Scientific), 10 ng/ml IFN‐α (PHC4014, Fisher Scientific), 10 ng/ml IFN‐β (PHC4244, Fisher Scientific), 10 ng/ml IFN‐γ (PHC4031, Fisher Scientific), or 10 ng/ml TNF‐α (PHC3015, Fisher Scientific). Then after 24 h, luciferase activity was measured by using the Dual‐Luciferase Reporter Assay System kit (Promega). A549‐hACE2 cells were transfected with PD‐L1 promoter plasmid expressing luciferase. After that, A549‐hACE2 cells were incubated with SARS‐CoV‐2 wild‐type, and Omicron variants spike‐pseudotyped lentivirus for 48 h followed by reporter assays.
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