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9 protocols using whatman no 1 paper

1

Laccase Activity in Fungus-Colonized Wood

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Laccase activity in R. placenta 45 was measured after 16 weeks incubation in untreated, MCA_LTBA and MCA_HTBA-treated wood colonized by R. placenta 45 (see protective effectiveness of MCA active ingredients) and after 2, 4, and 9 weeks in liquid cultures. For detection of laccase in wood, the colonized samples were treated according to Wei et al. [30 (link)]. The grounded wood was stirred overnight at 4C° in dist. H2O containing 1M NaCl to extract extracellular proteins. The liquid phase was separated from the solids by vacuum filtration through Whatman no 1 paper and concentrated in an ultrafiltration cell (Ultracel, Millipore) fitted with 10-kDa cutoff membrane.
Laccase activity was measured as initial velocity of the oxidation of ABTS (2,2'-azino-bis(3-ethylbenzothiazoline-6-sulphonic acid), 3 mM) to its cation radical at room temperature (22–25°C) and at pH 4.5 (citrate buffer 100 mM). Changes in absorbance (ΔA) at 420 nm were recorded with UV-visible spectrophotometer (Genesys 10S UV-vis, Thermo Scientific Inc., Waltham, MA, USA). One volumetric activity unit (U) was defined as the amount of enzyme transforming 1 μmol of ABTS per min and the volumetric activities were calculated using an extinction coefficient (ε) of 36000 mol-1 L cm-1[38 , 39 ].
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2

Preparation and Composition of CLUPS Medium

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The composition and preparation of CLUPS medium are the same as those of PEHPS medium [14 (link)], except for the substitution of beef liver (PEHPS) by beef lung (CLUPS). The main components of CLUPS are casein, lung and pancreas extract, and bovine serum. Table 1 compares the composition of the three media, PEHPS, TYI-S-33, and CLUPS. Once prepared, the basal medium was sterilized by filtration over a 0.22-μm filter (Millipore, Millipore Corporation, Billerica, MA, USA) and stored in 5.5-mL aliquots at -20°C. Just before use, CLUPS is supplemented with 8.3% v/v bovine serum. Bovine serum was also produced in-house as follows: about 15 L fresh blood from cows for human consumption was collected in a sterile way at a local slaughterhouse. After blood coagulation, the serum was recovered, and the complement was heat-inactivated (56°C, 1 h). Next, the serum was prefiltered through Whatman No. 1 paper before being sterile-filtered through a series of sterile Millipore HAWP filters (Millipore, Millipore Corporation, Billerica, MA, USA) from 5 to 0.22 μm. Serum was frozen at -70°C until use.
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3

Fungal and Bacterial Supernatant Extraction

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To obtain the supernatant of Gl006, the fungus was grown in Erlenmeyer (300 mL) with 150 mL of sterile PDB (Difco®) for five days (125 rpm, 25 °C) with an initial concentration of 1 × 105 conidia.mL−1. After incubation, the fermentation broth was harvested filtering by Whatman No. 1 paper and subsequently by sterile 0.22 μm filters (Millipore®) and stored at −20 °C until its use. To obtain the supernatant of Bs006, bacteria was grown in sterile LB broth for 48 hours and then was centrifuged. Supernatant was harvested and filtered with sterile 0.22 μm filters (Millipore®). Biomass obtained from Bs006 culture was washed twice to eliminate waste of supernatant and resuspended in SDW, homogenizing by shaking in vortex at maximum speed for two minutes, to be used as inoculum in these experiments. On the other hand, conidia of Gl006 were harvested from a seven-day-old culture on PDA, flooding the medium with sterile distilled water and scraping with a sterile metal rake. The suspension obtained was shaken in a vortex at maximum speed for 30 seconds and then was filtered with sterile muslin (pore size 0,5 mm) to eliminate pieces of mycelium.
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4

Synthesis of Silver Nanoparticles from Syzygium cumini Seeds

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The fresh seeds of Syzygium cumini were washed with sterile water, and air-dried. About 10 g of seeds were ground to fine powder and dissolved in 100 mL sterile water, vigorously vortexed, and then boiled for 20 minutes. After cooling, the solutions were filtered by Whatman No. 1 paper (Maidstone, UK) and then the filtrate was collected and stored at 4°C.25 (link) For the synthesis of AgNPs, 25 mL of aqueous seed extract was transferred into 75 mL of 1 mM silver nitrate (AgNO3, Sigma Aldrich, St. Louis, MO, USA) solution. The mixture was kept at room temperature overnight. The change in color of the solution from pale yellow to dark brown was an indication of the formation of AgNPs. The solution was washed with double distilled water three times at 14,000 rpm for 10 minutes to separate the AgNPs.25 (link)
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5

Water Solubility Determination of Films

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Water solubility (WS) was measured as follows. Films were cut into circumferences of 40 mm diameter and were immersed in 20 mL of distilled water with 2% (w/w) Tris-HCl pH 7.0 (Sigma-Aldrich). Samples were kept for 24 h at room temperature. After this time, the mixture was filtered using a vacuum pump and Whatman no 1 paper (Sigma-Aldrich) to recover the insolubilized pieces of films, and they were dried in an oven at 105 °C for 24 h. WS was calculated as follows [28 (link)]: WS(%)=(m1m2)/m1×100 
where m1 is the weight (g) of the dry films, and m2 is the weight (g) of the solubilized and dry films. Experiments were carried out in triplicate and the reported results correspond to the mean value.
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6

Extraction and Quantification of Yeast Lipids

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Lipids from dry yeast cell mass or dry homogenized fermented substrate were extracted in chloroform:methanol (Sigma-Aldrich) (2:1 v/v) according to Folch et al. (1957) method as modified by Dourou et al. (2017) (link). The extracts were filtered through Whatman No. 1 paper, [11] washed with a KCl (Sigma-Aldrich) 0.88% (w/v) solution and dried over anhydrous Na 2 SO 4 (Sigma-Aldrich). Finally, the solvents were evaporated under vacuum using a Rotavapor R-20 device (BUCHI, Flawil, Switzerland), and the total lipids were gravimetrically determined.
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7

Radiolabeling DNA Aptamer for MUC1/Y Detection

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The radiolabelling process was done using 150 µg of S11b DNA aptamer against the MUC1/Y incubated in stannous chloride (SnCl2) solutions (80 µL/mL) (Sigma–Aldrich, St Louis, MO, USA) for 20 min at room temperature. Then, this solution was incubated with 100 µCi (approximately 300 µL) of technetium-99m (99mTc) for another 10 min. In order to establish the quality control of the labelling process, radio thin layer chromatography (RTLC) was performed using Whatman paper no.1 as the stationary phase, 200 µL of 99mTc- S11b DNA aptamer against the MUC1/Y as spot point and acetone (Sigma–Aldrich, St Louis, MO, USA) as the mobile phase. The radioactivity of the strips was verified in a γ-counter (Perkin Elmer Wizard® 2470, Shelton, CT, USA). The RTLC was performed in triplicate for each time point (0, 2, 4, and 6 h).
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8

Extraction of Bioactive Compounds from RPW

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Freeze-dried RPW (2.5 g) was extracted three times using acetone (50 mL) or acetone:ethanol mixture (50 mL; 36:64 v/v) in solid to solvent ratio 1:20 w/v, with the same volume of solvents. The extraction was performed using a laboratory shaker (Unimax 1010, Heidolph Instruments GmbH, Kelheim, Germany) at 300 rpm, under light protection, at room temperature, for 10 min. The obtained three extracts were filtered (Whatman paper No.1, Sigma-Aldrich, St. Louis, MO, USA), combined, and stored in dark bottles at −20 °C till further analysis.
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9

Production of P. eryngii Mycelial Biomass

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P. eryngii (18.K07) mycelial culture was obtained from Haryana Agro Research Centre, India, and maintained in potato dextrose agar plates. The seed culture was prepared in 100 ml potato dextrose broth medium (24 g/l) by transferring two 8 mm punches of mycelia taken from a full grown fresh agar plate using a cork borer, properly crushed using an Ultra-Turrax (IKA, Germany) homogenizer for 20 s at 12,000 rpm and incubated under aerobic conditions for 4 days at 130 rpm and 28°C. The production media composition was kept as described in Singh et al. 2020 [11] . About 4% homogenized inoculum was used to inoculate production media. The mycelia production was accomplished in 10 days with complete consumption of carbon source. The produced mycelia were collected, washed thrice using deionized water, and filtered (Whatman paper no.1, Sigma-Aldrich, USA).
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