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2 protocols using licor irdye 800cw goat anti rabbit igg h l

1

Cell and Tissue Protein Extraction

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Cultured cells were pelleted by centrifugation at 1,000 g/min for 5 min at 4°C, and then lysed with M-PER (Thermo Fisher Scientific, 78501) with protease inhibitor (Roche, 4693159001). Mouse tissues were homogenized by TissueLyser II (Qiagen) in ice-cold T-PER (Thermo Fisher Scientific, 78510) with protease inhibitor (Roche, 4693159001). The protein concentration was determined using Pierce BCA Protein Assay Kit (Pierce, 23225). Normalized protein lysates were boiled for 10 min in reducing SDS sample buffer (Boston BioProducts, BP-111R). Primary antibodies were as follows: mouse anti-Rep (Origen Technologies, AM09104PU-N, 1:100), mouse anti-VP1/2/3 (PROGEN Biotechnik, 61058, 1:200), mouse anti-EGFP (Abcam, AB184601, 1:2000), rabbit anti-GAPDH (Abcam, ab9485, 1:2000). Secondary antibodies we as follows: LICOR IRDye 680RD goat anti-mouse IgG (H + L) (LI-COR Biosciences, 926-68070, 1:3000), LICOR IRDye 800CW goat anti-rabbit IgG (H + L) (LI-COR Biosciences, 926-32211, 1:3000). Blot membranes were imaged by LI-COR scanner (Odyssey) and quantified by ImageJ Fiji.
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2

Comprehensive Protein Extraction and Western Blot Analysis

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Cell cultures were lysed in ice-cold 1% NP-40 buffer (50 mM Tris HCl, 150 mM NaCl, 1% NP-40, pH 7.6) with protease inhibitor (Roche, Cat. No. 4693159001). Tissues were homogenized in ice-cold T-PER protein extraction reagent (Thermo Fisher Scientific, Cat. No. 78510) with protease inhibitor (Roche, Cat. No. 4693159001) using TissueLyser II (Qiagen). Total protein concentration was determined by bicinchoninic acid (BCA) method (Pierce, Cat. No. 23225). Normalized protein lysate was boiled with 4x Laemmli Sample Buffer (Bio-rad, Cat. No. 1610747) at 95 °C for 10 min. Primary antibodies rat anti-LAMP1 (BD Pharmingen, RUO - 553792) (1:2,000 dilution), mouse anti-FLAG M2 (Sigma, Cat. No. F1804) (1:5,000 dilution), rabbit anti-GAPDH (Abcam, Cat. No. ab9485) (1:5,000 dilution) and secondary antibodies LICOR IRDye 680RD Goat Anti-Rat IgG (H + L) (LI-COR Biosciences, Cat. No. 926-68076) (1:5,000 dilution), LICOR IRDye 680RD Goat Anti-Mouse IgG (H + L) (LI-COR Biosciences, Cat. No. 926-68070) (1:5,000 dilution), LICOR IRDye 800CW Goat Anti-Rabbit IgG (H + L) (LI-COR Biosciences, Cat. No. 926-32211) (1:5,000 dilution) were used in Western blot. Blot membrane was scanned with a LI-COR scanner (Odyssey). Western blot quantification analysis was performed with Image Studio Lite (LI-COR).
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