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2 protocols using l glutamic acid 13c5 15n

1

Metabolomic Analysis of Plant Pathogen Infection

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Samples were prepared from control and infected 5-week-old plants47 (link). 20 mg of grinded samples were mixed with 1 mL extraction buffer (20/20/60 v/v/v chloroform:water:methanol) including internal standards for GC–MS and LC–MS. LC–MS internal standards were: 13C9-phenylalanine, 13C3-caffeine, D4-cholic acid, D8-arachidonic acid and 13C9-caffeic acid (Sigma, St. Louis, MO, USA). GC–MS internal standards were: L-proline-13C5, alpha-ketoglutarate-13C4, myristic acid-13C3, cholesterol-D7 (Cambridge Isotope Laboratories, Inc., Andover, MA, USA) and succinic acid-D4, salicylic acid-D6, L-glutamic acid-13C5,15N, putrescine-D4, hexadecenoic acid-13C4, D-glucose-13C6, D-sucrose-13C12 from Sigma. The samples were bead-beated and centrifuged as described27 (link). Most of the supernatants, 200 µL for LC–MS analysis and 50 µL for GC–MS analysis, were transferred to micro vials, evaporated to dryness and stored at − 80 °C until analysis. Small aliquots of the remaining supernatants were pooled and used as quality control (QC) samples. MSMS analysis (LC–MS) was run on the QC samples for identification purposes. The samples were analyzed in batches according to a randomized run order on both GC–MS and LC–MS.
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2

Diverse Metabolite Profiling Techniques

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Rotenone (Sigma: R8875); PKM2 inhibitor compound 3 k (Sigma: AMBH303C6BA3); DASA-58 (Sigma: SML2853); Serine (Sigma: S4500), Cell Proliferation Kit II (XTT) (Sigma: 11465015001); DNA extraction with DNeasy Blood and Tissue Kit (Qiagen: 69506); RNA extraction with RNeasy Mini Kit (Qiagen: 74106); cDNA synthesis with High-Capacity cDNA Reverse Transcript Kit (Thermo Fisher Scientific: 4368814); Relative quantitative PCR with KAPA SYBR Fast Universal Kit (Sigma: KK4602). Absolute quantification PCR with KAPA PROBE Fast Universal Kit (Sigma: KK4702). Solvents: Methanol, HPLC-grade was obtained from Fischer Scientific (Waltham, MA, USA) Chloroform, Suprasolv for GC was obtained from Merck (Darmstadt, Germany) H2O, Milli-Q. Stable isotopes internal standards: L-proline-13C5, alpha-ketoglutarate-13C4, myristic acid-13C3, cholesterol-D7 were obtained from Cil (Andover, MA, USA). Succinic acid-D4, salicylic acid-D6, L-glutamic acid-13C5,15 N, putrescine-D4, hexadecanoic acid-13C4, D-glucose-13C6, D-sucrose-13C12 were obtained from Sigma (St. Louis, MO, USA).
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