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12 protocols using cell trace carboxyfluorescein succinimidyl ester cfse

1

Measuring VSMC Proliferation via CFSE

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CellTrace carboxyfluorescein succinimidyl ester (CFSE) (Invitrogen) was used to enable the measurement of VSMC proliferation. Carboxyfluorescein succinimidyl ester is a membrane permeant fluorescein‐based dye that can be used to track cell division due to the progressive halving of the fluorescence intensity of the dye in cells after each division. Briefly, CADASIL and control VSMC were grown to 90% confluence and harvested after washing twice with PBS. The cells were centrifuged and re‐suspended with 1 mL pre‐warmed PBS followed by labelling with 1 μmol/L CFSE for 10 minutes at 37°C. Equal numbers of CFSE‐labelled cells were incubated for either 3 or 7 days. Unlabelled cells were used as negative controls. Flow cytometry was performed using a FACSCalibur Cytometry, and data were analysed using the CellQuest software (BD Biosciences). The proliferation rate of VSMCs was also investigated using immunofluorescent staining of the proliferation‐associated Ki67 protein as previously described.29 The quantification of Ki67 positive cells was based on the evaluation of at least 500 cells.
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2

Plasmablast Differentiation and Notch2 Expression

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For plasmablast-differentiation assays, naïve B cells were isolated from splenic cell suspension by using the CD43 depletion B cell Isolation Kit (Miltenyi) according to the manufacturer’s instructions. To monitor cell division B cells were stained with CellTrace Carboxyfluorescein succinimidyl ester (CFSE) (Invitrogen) according to the manufacturer’s protocol. Cells were cultured for 48 h at a density of 5 × 105 cells/ml in flat-bottom 96 well plates in RPMI-1640 (Gibco) supplemented with 10% fetal calf serum (FCS), 1% L-glutamine, 1% non-essential amino acids, 1% sodium pyruvate, 50 µM β-mercaptoethanol and stimulated with 50 µg/ml lipopolysaccharide (LPS, Sigma). Cells were harvested after 48 h and analyzed by flow cytometry after staining with anti-hCD2-APC and anti-CD138-PE antibodies. Dead cells were discriminated from living cells using a fixable dead cell staining kit (Invitrogen).
For Notch2 surface expression analysis, naïve FoB cells of control mice were purified from splenic cell suspension using the MZ and Fo B Cell Isolation Kit (Miltenyi). 5 × 105 FoB cells/well were cultured as described above but stimulated with 15 µg/ml α-IgM for up to 72 h until harvest and staining with anti-Notch2-PE antibody.
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3

Ex Vivo CD4+ T Cell Proliferation

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From OT-II and 2D2 mice, the spleens and lymph nodes (axillary, brachial, inguinal) were harvested and mechanically homogenized, the red blood cells lysed, and the homogenate passed through a 70 µM cell strainer, and brought to single-cell suspension in media at 1 × 108 cells/ml. CD4+ T cells were enriched by negative selection according to the manufacturer’s guidelines using a kit from StemCell Technologies (Vancouver, BC, Canada). Enriched CD4+ T cells were then stained for 20 min with 1 µM CellTrace™ carboxyfluorescein succinimidyl ester (CFSE; Invitrogen, Eugene, OR, USA). BMDCs, cultured as described above, were treated with MOG35–55 or OVA323–339 peptide on day 6. On day 7, the peptide-loaded BMDCs were mixed with the freshly isolated and CFSE-stained CD4+ T cells (1:5 ratio in triplicate), placed into 96-well round bottom plates, and incubated for 3 days before analysis of CD4+ T cell proliferation (dilution of CFSE). BMDC:T cell co-cultures exposed to plate-bound anti-CD3ε and soluble anti-CD28 antibodies (both from Biolegend, San Diego, CA, USA) served as positive controls.
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4

Immune Cell Characterization Protocol

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Dextran (50,000), Dextran sulfate (7000–20,000), chondroitin sulfate, heparin, N-acetyl heparin, and trypsin-EDTA (0.25%) were purchased from Sigma-Aldrich (St. Louis, MO, USA), and the powder reagents were dissolved in sterile water. FITC- or PE-labeled anti-CD138, anti-CD4, anti-CD19, and monensin were purchased from Biolegend (San Diego, CA, USA). FITC-labeled anti-CD56 and PE-Cy5-mouse anti-human CD107a were purchased from BD Pharmingen (San Diego, CA, USA). FITC-labeled anti-human or anti-mouse IgG Fc was purchased from Sigma (St. Louis, MO, USA). PE-conjugated streptavidin was purchased from BD Biosciences (San Jose, CA, USA). Cell trace carboxyfluorescein succinimidyl ester (CFSE) was purchased from Invitrogen (Carlsbad, CA, USA). Protein A/G agarose and heparin sepharose were purchased from Santa Cruz Biotechnology (Dallas, TX, USA) and Abcam (Cambridge, UK), respectively.
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5

Evaluating T-cell Anergy Induction

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To assess the proliferative response to a secondary allogenic stimulation, T-alloA210, T-allo10, and T-allo cells were labeled with CellTrace™ carboxyfluorescein succinimidyl ester (CFSE; Life Technologies, Carlsbad, CA, USA), and plated with allogenic mDC (from the same donor used during the primary stimulation) at a 10:1 T:DC ratio, in 200 µL of complete medium in 96-well round bottom plates. To test if T-alloA210 cells were able to respond to a polyclonal stimulation, the cells were stimulated with Dynabeads coated with anti-CD3 and anti-CD28 antibodies (Life Technologies, Carlsbad, CA, USA) at a 1:20 bead:cell ratio. After 72 h, the percentage of CFSE-low divided cells within the CD3+CD4+ population was assessed by flow cytometry. Percentage of T-cell anergy was calculated using the formula: “(% proliferation T-allo with mDC – % proliferation T-alloA210 or T-allo10 with mDC)/% proliferation T-allo with mDC.” Stability of T-alloA210 and T-allo10 cell anergy was tested in the presence or absence of 5 ng/mL of rhIL-1β, rhTNF-α, and rhIL-6 (R&D Systems, Minneapolis, MN, USA) upon 72 h stimulation by allogenic mDC.
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6

Bone Marrow Transplantation Assay

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Lineage-deprived WT or dKO bone marrow cells were labeled with CellTrace carboxyfluorescein succinimidyl ester (CFSE) (Life Technologies), and 5X10e5 cells were transplanted into lethally irradiated recipients. 16 hr later, recipients were sacrificed, and the percentage of CFSE+ cells in total bone marrow was analyzed by FACS.
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7

Fluorescent Labeling of Extracellular Vesicles

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EVs were re-suspended in 400 μL PBS at a concentration of 0.1–0.2 μg. The EVs were dyed by CellMask Deep Red (Thermo Fisher Scientific), with excitation/emission wavelength at 649/666 nm. EVs were stained with crimson dye (1:1000) at 37 °C for 20 min for labeling and washed with PBS (1 to 10,000 v/v ratio) to remove the unbound dye. Then, the EVs were separated by centrifugation at 100,000×g for 1 h and resuspended in PBS. Next, the EVs were stained with CellTrace™ carboxyfluorescein succinimidyl ester (CFSE, Life Technologies, Carlsbad, CA) and observed at 492/517 nm. The CFSE dyes were permeated into detached cells using endoesterase and subsequently reacted with intracellular primary amines to form a stable and non-diffusible fluorescent staining. LL29 cells (3–5 × 105) in serum-free medium were dyed by CFSE at a 1:1000 dilution (5 μM) and incubated at 37 °C for 20 min under conditions devoid of light. The solution was then centrifuged and the pellet was rinsed with a serum-free medium at a ratio of 1:10 to eliminate the unbound dye.
EVs were then cultured in an 8-well chambered slide (Millipore, Burlington, MA). CFSE-dyed cells were treated with EVs, fixed with 3.7% (w/v) formaldehyde at ambient temperature for 5 min, and subsequently imaged with a fluorescence microscope.
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8

Isolation and Labeling of Apoptotic Neutrophils

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Fresh human blood was collected with heparin (10 U/ml) from healthy volunteers, as approved by the Partners Human Research Committee (protocol 1999P001297). Polymorphonuclear neutrophils (PMN) were isolated by density gradient using Ficoll-histopaque (Sigma-Aldrich, 10771) 30, 31 . Apoptotic neutrophils were prepared by plating 1 x 10 7 cells/ml in 5 ml DPBS (ThermoFisher Scientific, MA) for 24 hours in a 100 mm X 20 mm petri dish (Corning, AZ). After 24 hours, apoptotic neutrophils were removed from petri dishes with EDTA (5 mM) (Millipore Sigma, MO) 32 and stained with Cell Trace ™ Carboxyfluorescein succinimidyl ester (CFSE) at a concentration of 5 μM for 30 min at 37°C (ThermoFisher Scientific, MA).
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9

Isolation and Senescence of Human Erythrocytes

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Human peripheral blood erythrocytes from healthy human volunteers were isolated by centrifugation and aspiration of the platelet-rich plasma and buffy coat layer. Erythrocytes were purified by resuspension in PBS (Lonza, NJ) [10% hematocrit] and centrifugation (500 X g) followed by aspiration of the top 10% of the erythrocyte layer (this purification procedure was carried out with six repetitions) 31, 33 . Purified erythrocytes were then resuspended with PBS (20% hematocrit) and stored at 4°C for ~96 hours to induce senescence. Senescent erythrocytes were counted, washed twice with DPBS (ThermoFisher Scientific, MA) and then stained with Cell Trace ™ Carboxyfluorescein succinimidyl ester (CFSE) at a concentration of 5 μM for 30 min at 37°C (ThermoFisher Scientific, MA).
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10

Isolation and Labeling of Human RBCs

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Human peripheral blood red blood cells (RBCs) from healthy human volunteers were isolated by centrifugation and aspiration of the platelet-rich plasma and buffy coat layer. Erythrocytes were purified by resuspension in RPMI-1640 (Lonza, NJ) [10% hematocrit] and centrifugation (500 X g) followed by aspiration of the top 10% of the erythrocyte layer (this purification procedure was carried out with six repetitions) (24 (link)). Purified erythrocytes were then resuspended (20% hematocrit) at 4°C for ~24–36 h to induce apoptosis. Erythrocytes were next washed twice with DPBS (ThermoFisher Scientific, MA) and then stained with Cell Trace™ Carboxyfluorescein succinimidyl ester (CFSE) at a concentration of 5mM for 30 min at 37°C (ThermoFisher Scientific, MA).
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