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6 protocols using dmem medium

1

Cell Culture Protocols for Lung Cancer Lines

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All cell lines (A549, NCI-H1975, NCI-H358, NCI-H1299, SPC-A1, and human bronchial epithelial cell (HBE)) were purchased from Shanghai Institutes for Biological Science, China. NCI-H1975, A549 and NCI-H1299 cells were cultured in RPMI 1640 medium (KeyGene, Nanjing, China), NCI-H358, SPC-A1, and HBE cells were cultured in DMEM medium (KeyGene, Nanjing, China), supplemented with 10 % fetal bovine serum with 100U/ml penicillin and 100 mg/ml streptomycin included. All cell lines were grown in humidified air at 37 °C with 5 % CO2.
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2

Lung Cancer Cell Line Characterization

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All cell lines (A549, H1299, H1650, SPC‐A1, H1975, H358, PC9, and human bronchial epithelial cell [HBE]) were purchased from Shanghai Institutes for Biological Science (Shanghai, China). A549, H1650, SPC‐A1, H1975, H358, and HBE were cultured in DMEM medium (KeyGene, Nanjing, China); H1299 and PC9 were cultured in RPMI1640 medium (KeyGene), supplemented with 10% FBS with 100 μg/mL penicillin and 100 mg/mL streptomycin included. All cell lines were grown in humidified air at 37°C with 5% CO2. Cell cultures were occasionally tested for mycoplasma (last tested December 2018). Authentication of cells was verified by short tandem repeat DNA profiling within 6 months, and cells used in experiments were within 10 passages from thawing. Cell proliferation was examined using a CCK‐8 Kit (Roche Applied Science). Colony formation assays were performed to monitor LUAD cell cloning capability. Flow cytometer (FACScan, BD Biosciences) equipped with CellQuest software (BD Biosciences) was used to detect apoptosis level.
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3

Investigating NEAT1 regulation in esophageal cancer

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Normal human esophageal epithelial cells (HET-1A), ESCC cell lines (ECA109, TE1, TE13, KYSE150 and KYSE140) and Human Umbilical Vein Endothelial Cells (HUVEC) were purchased from Shanghai Institutes for Biological Science (Shanghai, China). These cells were cultivated in in DMEM medium (KeyGene, Nanjing, China) supplemented with 10% fetal bovine serum (KeyGene, Nanjing, China) at 37°C in 5% CO2 atmosphere. SiRNAs targeting NEAT1, expression plasmids of MDM2, miR-590-3p mimics and shRNAs of NEAT1 were purchased from RiboBio, Guangzhou, China. Transfection was performed with Lipofectamine 3000 (Invitrogen, CA, USA) according to the manufacturer’s instructions. The transfected cells were incubated at 37°C for 6 h and then replaced with fresh medium. The sequences are shown in Table S1.
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Cultivation of Diverse LUAD Cell Lines

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LUAD cell lines (NCIH1975, NCIH1650, PC9, A549, NCIH1299) and human bronchial epithelial cell (HBE) were purchased from Shanghai Institutes for Biological Science, China. NCIH1975, NCIH1650 and HBE cells were cultured in DMEM medium (KeyGene), and PC9, A549 and NCI-H1299 cells were cultured in RPMI 1640 medium (KeyGene), supplemented with 10% fetal bovine serum. All cells were cultured at 37 °C in a humidified incubator containing 5% CO2.
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5

Modulation of Gastric Cancer Cell Lines

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Human gastric normal epithelium cell line (GES-1) and GC cells (BGC-823, SGC-7901, and MGC-803) were purchased from Shanghai Institutes for Biological Science, China. BGC-823, SGC-7901 and MGC-803 cells were cultured in RPMI 1640 medium (KeyGene, Nanjing, China). GES-1 cells were cultured in DMEM medium (KeyGene, Nanjing, China) supplemented with 1% penicillin/streptomycin, l-glutamine, and 10% fetal bovine serum (FBS, Invitrogen, Carlsbad, CA, USA). Culture plates were incubated at 37°C in a humidified atmosphere with 5% CO2.
The siRNA specifically targeting RP11-138J23.1, HuR and VAV3 was designed and synthesized by Invitrogen (Invitrogen, USA). The nucleotide sequences of all siRNAs were shown in Supplementary Table S1. The cells were transfected with siRNA using RNAiMAX (Invitrogen, USA). In addition, RP11-138J23.1 overexpression plasmid and vectors containing shRNA targeting RP11-138J23.1 was constructed and transfected with XtremeGENE HP DNA transfection reagent (Roche, Basel, Switzerland).
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6

Cell Line Culturing and Transfection

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All cell lines (A549, H1299, H1975, PC9, H358, SPC-A1, and HBE1) were obtained from the Cell Bank of the Chinese Academy of Sciences (Shanghai, China). A549, H1299, H1975, PC9, H358 cells were cultured in RPMI 1640 medium (KeyGene, Nanjing, China), SPC-A1 and HBE1 cells were cultured in DMEM medium (KeyGene, Nanjing, China), with 100 units/mL penicillin and 100 units/mL streptomycin and 10% FBS (Thermo Fisher Scientific, MA, USA) at 37 °C in an incubator with 5% CO2. Authentication of cells were verified by STR profiling and mycoplasma contamination of cells were tested using MycoBlueTM mycoplasma detector (Vazyme, Nanjing, China). Transfections were performed using the Lipofectin reagent (Thermo Fisher Scientific) when cells were seeded at 50–80% confluence, according to the manufacturer’s protocol. For siRNA infection, cells were prepared to 30–50% confluence. Forty-eight hours after transfection, the cells were rinsed twice with phosphate-buffered saline and harvested for next experiments. CHX and MG132 were purchased from MedChem Express (NJ, USA).
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