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Abi prism 7900 fast sequence detection system

Manufactured by Thermo Fisher Scientific

The ABI Prism 7900 Fast Sequence Detection System is a real-time PCR instrument designed for high-throughput gene expression analysis. It features a 384-well block format and can perform up to 384 individual reactions simultaneously. The system utilizes fluorescence-based detection technology to monitor the amplification of target DNA sequences in real-time.

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4 protocols using abi prism 7900 fast sequence detection system

1

Validating Therapeutic Targets via RT-PCR Analysis

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RT−PCR was used to validate the potential therapeutic targets which predicted by network pharmacology. EESCs were seeded in 6-well plates and divided into control group and SZC group, The SZC group was treated with 200 µg/ml SZC and incubated at 37°C for 24 h. Total RNA was extracted form the EESCs using the TRIzol® reagent (Invitrogen, 15596018). The RNA was reverse-transcribed into cDNA utilizing a Prime Script RT Reagent Kit (Takara, RR036A). RT−PCR was performed using SYBR Premix Ex Taq (Takara, RR820A), and the results were analyzed using a ABI Prism 7900 Fast Sequence Detection System (Thermo Fisher Scientific). Each sample was analyzed in three replicate wells, and the fold change in the transcriptional expression of the above genes was calculated using the 2−ΔΔCt method. The relative mRNA expression levels were normalized to those of ACTB. The primer sequences of these genes are provided in Supplementary Table S1.
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2

Transcriptome Analysis and Genotyping of Murine Placenta

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Total RNA was extracted from human or murine placental tissues or cells by using Fast Tissue RNA Purification Kit (EZBioscience, EZB-RN5), which was then reverse-transcribed into cDNA with 4×Reverse Transcription Master Mix (EZBioscience, A0010GQ). Quantitative reverse transcription-PCR (RT-qPCR) was performed using 2× Color SYBR Green qPCR Master Mix (ROX2 plus) (EZBioscience, A0012-R2) and the analysis was based on ABI Prism 7900 Fast Sequence Detection system (Thermo Fisher Scientific). The fold change at the transcriptional level of the target genes was displayed by calculating the 2-ΔΔCt method and each sample was run in triplicates. Relative mRNA expression levels were normalized to β-actin (ACTB). Sequences of each pair of primers was displayed in Table 1.
Moreover, EZ-press Tissue Direct PCR Kit (EZBioscience, EZB-TDP1) was used to genotype Il-27ra allele of dissected murine embryos as manufacturer's instructions. PCR products were then amplified with the following primers: Wild-type Forward: 5′-CGCAGAAAGTTCTCATCT-3′; Wild-type Reverse: 5′- TCATACAGTACCCATCCC-3′; Knockout Forward: 5′- ACCGTAAAGCACGAGGAA-3′. Knockout Reverse: 5′- GACCACCAAGCGAAACAT -3′. Next, 2% agarose gel in TBE buffer (90 mM Tris, 90 mM boric acid, 2 mM EDTA) was prepared for electrophoresis at 90 V for 60 min.
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3

Real-Time PCR Gene Expression Analysis

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Total RNA was isolated with Qiagen RNA extraction kit according to the manufacturer’s protocol. One microgram of total RNA was used for reverse transcription reaction using iScript Reverse Transcription kit (Bio-rad Hercules, CA) according to manufacturer’s protocol. The expression levels of BOK, or Mcl-1, and 18S (housekeeping gene) were analyzed using SYBR Green Master mix (Qiagen Valencia, CA) and gene-specific primers on Applied Biosystems (ABI) Thermocycler 7900 Fast. The real-time PCR was done in triplicate for each run. Reverse transcription was performed using the iScript Reverse Transcription kit (Bio-rad Hercules, CA). Real-time PCR was conducted on an ABI Prism 7900 Fast Sequence Detection System (ThermoFisher Scientific Inc., Foster City, CA) using 95°C denaturation for 15 minutes followed by 40 cycles of 94°C for 15 seconds, then 60°C for 30 seconds, and 72 °C for 30 second. Fold change was generated using the equation 2−ΔΔCt.
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4

Quantitative PCR Analysis of Gene Expression

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The total RNA was extracted using TRIzol® reagent (Invitrogen; Thermo Fisher Scientific, Inc., Waltham, MA, USA). RNA extraction was carried out on UEC tissues, paired adjacent healthy tissues, and two cell lines. The RNA was reverse-transcribed into cDNA using a Prime Script RT reagent kit (Takara Biotechnology Co., Ltd., Dalian, China). The qPCR was performed using an SYBR Premix Ex Taq kit (Takara Biotechnology Co., Ltd.) and analyzed using an ABI Prism 7900 Fast Sequence Detection system (Thermo Fisher Scientific, Inc.). The primer sequences of these genes are provided in Table 2. The fold change in the transcriptional expression of the above genes was calculated using the 2−ΔΔCt method, and each sample was analyzed in three replicate wells. The relative mRNA expression levels were normalized to β-actin (ACTB).
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