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7 protocols using na2b4o7

1

Lead Toxicity Amelioration by Borax

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Wistar Albino male rats weighing 200–300
g were used in the study. The rats were fed ad libitum. They were
housed under a constant photoperiod with normal amounts of light and
dark (12L:12D). During the experiments, the ambient temperature and
relative humidity were set at 20 ± 3 °C and 40–60%,
respectively. All experiments were carried out by complying with the
ethical rules stated in the Guide for the Care and Use of Laboratory
Animals. The protocol of the study was authorized by the Animal Experiments
Ethics Committee of Bingöl University (BUHADEK:18.05.2021-2021/02).
Twenty-four rats were divided into four groups (n = 6 each): Control (0.5 mL, i.p. isotonic solution), Pb (50 mg/kg/day
i.p., Merck, USA),45 (link) Na2B4O7 (4.0 mg/kg/day oral) (Sigma, USA),46 (link) and Pb + Na2B4O7. After the fifth day, anesthesia was induced in the rats using 60
mg/kg i.p. ketamine hydrochloride and 10 mg/kg i.p. xylazine. Liver
tissues were removed by median laparotomy, washed with phosphate-buffered
saline (PBS), and kept in a deep freezer (−80 °C) until
the analyses.
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2

Characterization of Hydroxyl Radicals

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All experiments were performed with water purified by a Milli-Q system. NaHCO3, NaOH, NaH2PO4, Na2HPO4, H3BO3, Na2B4O7 and other inorganic chemicals were obtained from Sigma-Aldrich at ACS reagent purity. Stock solutions of phenol (50 mM) and H2O2 (10 M), standardized by KMnO4 titration22 , were stored at 5 °C. 13C enriched NaHCO3 used for NMR analysis was purchased from Cambridge Isotope Laboratories Inc. 5,5-dimethyl-1-pyrroline N-oxide (DMPO, ESR grade) from Sigma Aldrich was used as a spin trap. The color indicator for H2O2 measurement, TiOSO4 (15% wt) solution, was purchased from Fluka.
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3

Western Blotting Reagent Protocol

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Tris, glycine, SDS, dimethylsulfoxide (DMSO), acrylamide and bis-acrylamide were purchased from Euromedex. Ponceau S, p-coumaric acid, bromophenol blue, brilliant blue R250, MgSO4, Ca(NO3)2, COSO4, CuCl2, ZnSO4, Na2M0O4, Na2B4O7, FeSO4, VOSO4, vitamins, HEPES, hydrogen peroxide, Tween 20, luminol, Triton X-100, sucrose, acetic acid, dithiothreitol (DTT), RNase A, and propidium iodide (PI) were obtained from Sigma. KCl, H2SO4 and KH2PO4 were from Merck. NaCl was from Fischer scientific. Tryptone peptone and yeast extract were obtained from Difco (Becton Dickinson). Ammonium persulfate (APS), N,N,N’,N’-tetra methyl ethylenediamine (TEMED), bovine serum albumin and Bradford reagents were purchased from BioRad. Propan-2-ol, ethanol, sorbitol, HCl, MgCl2, MnCl2 and (NH4)2SO4 were from Prolabo. Glycerol was obtained from Acros organique.
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4

Synthesis of Gold Nanostructures

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Glycine (≥99%), KAuCl4 (98%), Na2B4O7 (≥99.5%), NaOH (≥98%), 1-decanethiol (C10S) (99%), 1-octanethiol (C8S) (≥98.5%), 1,8-octanedithiol (C8S2) (≥97%), 4,4′-bis(mercaptomethyl)biphenyl (BMMBP) (97%), 2-aminoethanethiol (AET) (98%), methanol (99.8%), toluene (99.8%), and hexane (95%) were purchased from Sigma-Aldrich (St. Louis, MO). Au slugs (99.999%) were purchased from Alfa Aesar (Ward Hill, MA). Ethanol (99.99%) was purchased from Gold Shield Chemical (Hayward, CA). Water (≥18.2 MΩ) was generated from a Milli-Q system (Q-GARD 2, Millipore, Billerica, MA) and used for dilution and washing. Nitrogen gas (99.999%) was purchased from Praxair (Danbury, CT). Tungsten wire (99.95%) was purchased from California Fine Wire (Grover Beach, CA). All chemicals and materials were used without further purification.
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5

Synthesis of ZnFe2O4 Single Crystals

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ZnFe2O4 spinel single crystals were synthesized using the high-temperature solution growth method. Powders of reagents ZnO (Sigma Aldrich; 99.99%) and Fe2O3 (Sigma Aldrich; 99.995%) and solvent anhydrous Na2B4O7 (Sigma Aldrich; >99%) were ground together. The initial powder mixture was loaded in a 20-mL platinum crucible, tightly covered by a platinum lid, heated to Tg at a rate of 50 °C/h, and held at Tg for 12 h. The ratios of solvent to solute, defined as s = (mol Na2B4O7)/(mol 3d cations Zn and Fe), were maximized from solubility studies to achieve solute saturation at each Tg; s =0.94 for Tg = 1,000 °C, and s =1.4 for Tg = 850 °C. The crucibles were rotated inside the box furnaces throughout the synthesis process, with a rate of 96 rpm for Tg = 850 °C and 48 rpm for Tg = 1,000 °C. For Tg = 1,250 °C, either no rotation or a rotation rate of 24 rpm was used. ZnFe2O4 single crystals grow during the slow-cooling process, with a rate of −2 °C/h in the temperature range of 1,250 to 950 °C for Tg = 1,250 °C, −1.2 °C/h in the range of 1,000 to 800 °C for Tg = 1,000 °C, and −0.26 °C/h in the range of 850 to 750 °C for Tg = 850 °C, respectively. Afterward, the furnace was cooled down to room temperature naturally. Octahedron-shaped crystals (SI Appendix, Fig. S1) were extracted by etching in 7% HCl solution at 150 °C.
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6

Fungal Metabolomics Sample Preparation

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For conditioning the fungus for metabolomics experiments, a 6 mm diameter mycelia-covered agar plug of the actively growing colony margin was transferred to the center of a fresh petri dish (94 mm × 16 mm, Greiner Bio-One GmbH, Kremsmünster, Austria) containing minimal medium (0.52 g L−1 KCl (Roth); 0.52 g L−1 MgSO4 × 7(H2O) (Roth); 1.52 g L−1 KH2PO4 (Fluka) 0.0004 g L−1 Na2B4O7 × 10(H2O) (Roth); 0.004 g L−1 CuSO4 × 5(H2O) (Sigma-Aldrich, Burlington, MA, USA); 0.008 g L−1 FeSO4 × 7(H2O) (Roth); 0.008 g L−1 MnSO4 × 4(H2O) (Sigma-Aldrich, Burlington, MA, USA); 0.005 g L−1 Na2MoO4 × 7(H2O) Sigma-Aldrich, Burlington, MA, USA); 0.08 g L−1 ZnSO4 × 7(H2O) (Roth); 2.64 g L−1 (NH4)2SO4 (Roth); 1.6% Agarose (NEEO ultra-quality; Roth, Karlsruhe, Germany) pH 5.5). Moreover, 10 g L−1 native or labeled glucose was used as a sole carbon source. For cultivation on native (12C) glucose, D (+)-glucose (≥99.5% purity; Sigma-Aldrich, Burlington, MA, USA) was used. For the global labeling of the metabolome, the fungus was cultivated on 13C6 glucose (U-13C6 D (+)-glucose; 99.9%; Cambridge Isotope Laboratories, Inc., Woburn, MA, USA). Cultures were incubated for 3 days at 25 °C.
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7

Detailed Stem Cell Culture Protocol

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For all cell culture, α-MEM [15-012-CV] was obtained from Mediatech (Manassas, VA), FBS [S11550H] was obtained from Atlanta Biologicals (Flowery Branch, GA), and L-glutamine [25030-081] was obtained from Thermo Fisher/Gibco (Grand Island, NE). CM-DiI cell tracker [C7000] used in culture was obtained from Life Technologies (Grand Island, NE), and infrared cell tracker was also obtained from Life Technologies [D12731]. For plate coating, rat tail collagen I [354236] was obtained from BD Bioscience at 4.41 mg/mL concentration and Tenascin C was obtained from EMD Millipore [CC065] at 100 μg/mL. Na2B4O7 for prepolymer solvent was obtained from Sigma [S9640-25G], and AgNO3 and (NH4)2S2O8 for prepolymer catalyst solutions were obtained directly from the polymer manufacturer, CM-Tec (Newark, DE). For plug digestion and cell processing for flow, Liberase TL [0540102001] was obtained from Roche (Indianapolis, IN) and 40 μM filters [352340] for cell filtration were obtained from BD Bioscience.
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