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10 protocols using seahorse xfp cell mito stress test

1

CD4 T cell mitochondrial function

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Seahorse XFp Cell Mito stress test (Cat# 103010-100, Agilent Technologies, Santa Clara, CA) was performed according to the manufacturer’s protocol using an XFp instrument. CD4 T cells from healthy subjects were purified from PBMCs, cultured in complete RPMI-1640 medium with 10% FBS, and treated with 5 μM CPT or DMSO for 2 days. One day prior to the assay, Seahorse mini cartridges were hydrated overnight in a non-CO2 incubator. On the day of the assay, the treated cells were seeded onto mini culture plates pre-coated for 1 h with poly-D-lysine (Thermo Fisher Scientific). Approximately 100,000 cells per well were cultured in Seahorse XF RPMI assay medium supplemented with 1.0 mM of glucose, 100 µM of pyruvate, and 1.0 mM of glutamine. The following inhibitors from the Cell Mito stress test kit were added to the culture media in this order: 2.0 μM of Oligomycin, 1.5 μM of FCCP, and 2.0 μM of Rotenone/Antimycin A, and the related three sequential measurements were recorded. Data analysis was performed using the Seahorse Wave software and the Seahorse Mito stress test report generator.
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2

Mitochondrial Respiration in C2C12 Myotubes

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Seahorse XFp analyzer (XFp, Seahorse Biosciences, MA) was used to evaluate the mitochondria oxygen consumption rate (OCR) of C2C12 myotubes. After C2C12 myoblasts were seeded and differentiated in Seahorse XFp miniplates, myotubes were pretreated with AN07 (0.1 or 1 μM) for 1 h followed by the addition of LPS (100 ng/mL) for 24 h. Before assay, the fluorescence probes were activated by Agilent Seahorse XF calibrant at 37 °C in a non-CO2 incubator overnight. Subsequently, the culture medium was replaced with Agilent Seahorse XF base medium (with 1 mM pyruvate, 2 mM glutamine, 10 mM glucose, and pH adjusted to 7.4), and the miniplates were then placed in a non-CO2 incubator at 37 °C for 1 h. The key parameters of mitochondrial function were measured using Seahorse XFp Cell Mito Stress Test, which were obtained at the baseline and following sequential injection of oligomycin (1 μM), FCCP (1 μM), and a mixture of antimycin A plus rotenone (AA/ROT, 1 μM).
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3

Mitochondrial Function Profiling of Activated CD4+ T Cells

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Seahorse XFp Cell Mito Stress Tests (Cat# 103010-100; Seahorse, Agilent Technologies) were completed according to the manufacturer’s protocol using an XFp instrument. Briefly, CD4 T cells were purified from PBMCs, cultured in 10% FBS cRPMI with 30 IU/ml IL-2 (Cat #589104; BioLegend), and stimulated by 1μg/ml anti-CD3 (Cat # 300333) and 2 μg/ml anti-CD28 antibodies (Cat # 302943; BioLegend) for 3 days. One day before the assay, seahorse mini-cartridges were hydrated overnight in a non-CO2 incubator. On the day of the assay, seahorse mini plates were coated with 25 μl of 0.1 mg/ml poly-D-lysine (Cat #A3890401; ThermoFisher Scientific) for 1 h. Stimulated CD4 T cells were washed by DPBS and then plated onto pre-coated plates (2 x 105/well) with Seahorse XF RPMI-1640 medium with 1.0 mM Glucose, 100 µM Pyruvate and 1.0 mM Glutamine. Data was analyzed using the Seahorse Wave software.
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4

Mitochondrial Function Profiling in Fibroblasts

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Seahorse XFp Cell Mito Stress Tests (Seahorse, Agilent Technologies, Santa Clara, CA) (Supplementary Fig. 1) were performed according to the manufacturer’s protocol on an XFp instrument. Two days prior assay, Seahorse culture plates were coated with 16.7 µl/ml Matrigel in DMEM/F12 media (Corning, Corning, NY) for 2 hrs at 37 °C and stored at 4 °C. One day prior assay, 10,000 fibroblasts per well were plated and cultured in MEM15 media overnight. At day of assay, XF assay medium was supplemented with 10 mM glucose, 1 mM pyruvate, and 2 mM glutamine, and the pH adjusted to 7.4. After assay performance, cells were stained with CyQuant solution (Life Technologies - Thermo Fisher Scientific, Carlsbad, CA) diluted in XF assay medium and incubated for 1 hr in 37 °C. Green fluorescence (excitation: 485/20, emission: 528/20) was measured using a Synergy HT BioTek plate reader (BioTek Instruments, Winooski, VT) and values used for data normalization. Data analysis was performed using the Seahorse XFe Wave software, including the Seahorse XF Cell Energy Phenotype Test Report Generator.
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5

Seahorse XFp Cell Mito Stress Tests

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Seahorse XFp Cell Mito Stress Tests (Agilent Technologies; Santa Clara, CA) were completed using an XFp instrument and the Cell Mito Stress Test kit following the manufacturer’s instructions as described previously (24 (link)). Data were analyzed using the Seahorse Wave software.
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6

Mitochondrial Function Assay in Dental Pulp Stem Cells

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Seahorse XFp Cell Mito Stress Tests (Seahorse, Agilent Technologies, Santa Clara, CA) were performed following the manufacturer's protocol. At 24 hours prior to the assay, 2D and 3D cultured DPSCs were plated and cultured at 50,000 cells/well in a Seahorse XF24 plate (Seahorse; Bioscience, Billerica, MA, USA). After that, XF24 media were supplemented with 2 μM rotenone, 1 μM FCCP, and 1 μg/ml oligomycin. Treatment with the drugs into the medium occurred at the time points specified. The oxygen consumption rate (OCR) was analyzed using a Seahorse Bioscience XF24 Extracellular Flux Analyzer. The basal respiration rate was calculated before oligomycin treatment, and proton leak was measured after oligomycin treatment. The values of ATP production were measured through the difference between basal respiration and proton leak, and after FCCP treatment, spare respiratory capacity was confirmed through the difference between maximal respiration and ATP production.
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7

Bioenergetic Profiling and Metabolic Substrate Analyses

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Bioenergetic parameters were determined using Seahorse XFp Cell Mito Stress Tests (Seahorse, Agilent Technologies, Santa Clara, CA) and the processing of bioenergetic substrates were assessed in Biolog MitoPlate S-1 assays (Biolog, Hayward, CA). To determine biochemical compounds and function, the NAD/NADH-Glo™ and the Glucose Uptake-Glo™ Assay Kits (Promega, Madison, WI) were used. Mitochondrial densities were determined with the MitoTrackerTM Green FM dye (Invitrogen Thermo Fisher Scientific, Waltham, MA).
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8

Mitochondrial Stress Test in CD4 T Cells

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Seahorse XFp Cell Mito Stress Tests (Seahorse; Agilent Technologies) were completed following the manufacturer’s protocol using an XFp instrument. Briefly, one day before the assay, Seahorse mini-cartridges were hydrated at 37 °C overnight in a non-CO2 incubator. On the day of the assay, seahorse mini plates were coated with 25 μL of 0.1 mg/mL poly-D-lysine (Cat #A3890401) (ThermoFisher Scientific) for 1 h at room temperature. CD4 T cells were harvested following nucleofection. Approximately, 2 × 105 cells per well were plated into pre-coated mini plates and cultured in Seahorse XF RPMI-1640 medium supplemented with 1.0 mM Glucose, 100 µM Pyruvate, and 1.0 mM Glutamine. Data analysis were performed using the Seahorse Wave software.
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9

Seahorse XFp Cell Mito Stress Test

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Seahorse XFp Cell Mito Stress Tests (Agilent Technologies, Santa Clara, CA) were performed according to the manufacturer’s protocol using an XFp instrument. Two days prior to the assay, CD4 T cells were isolated and cultured in 10% FBS RPMI-1640 medium with 5 µM KML001 or DPBS control. One day prior to the assay, Seahorse mini-cartridges were hydrated in a non-CO2 incubator overnight. On the day of the assay, seahorse mini-plates were coated with 25 μl of 0.1 mg/ml poly-D-lysine (Thermo Fisher Scientific; Cat # A3890401) for 1 h at room temperature. The cells were harvested and washed by DPBS once. Approximately 200,000 cells per well were plated in pre-coated mini plates and cultured in Seahorse XF RPMI assay medium supplemented with 1 mM glucose, 100 µM pyruvate, and 1 mM glutamine. Data analysis was performed using the Seahorse Wave software, including the Seahorse Mito Stress Test report generator.
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10

Mitochondrial Function Assessment Using Seahorse

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The mitochondrial function of the cells was determined through real-time measurement of oxygen consumption rate (OCR) using the XFp Extracellular Flux Analyzer (Seahorse, Agilent Technologies, Santa Clara, CA, USA) and Seahorse XFp Cell Mito Stress Tests according to the manufacturer's instructions. The cells were seeded onto XFp cell culture miniplates in triplicates 7 h in advance and mitochondrial stress test was conducted in Seahorse XF base medium supplemented with 10 mM glucose, 1 mM sodium pyruvate and 2 mM l-glutamine in response to oligomycin A (1 μM), FCCP (1 μM) and rotenone/antimycin A (0,5 μM). Assays were analyzed using the Seahorse XF Report Generator software (Wave, Agilent).
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