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μct100 scanner

Manufactured by Scanco
Sourced in Switzerland

The μCT100 scanner is a compact and high-resolution micro-computed tomography (micro-CT) system designed for non-destructive 3D imaging of a variety of samples. The device uses X-ray technology to capture detailed, volumetric data about the internal structure and composition of specimens.

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14 protocols using μct100 scanner

1

Micro-CT Analysis of Rat Tooth Enamel and Dentin

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Rats were decapitated, and molar samples on the left and right sides of the maxilla were scanned with a μCT100 scanner (SCANCO Medical AG, Wangen-Brüttisellen, Switzerland). Ground sections of the teeth in the coronal and sagittal planes were made (Figure 1a) based on the images of the molars, where the mean thickness of enamel and dentin in Sprague–Dawley rats was determined to be 1 mm.
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2

Femoral Bone Analysis by μCT

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The harvested bones were fixed for 48 h in 4% paraformaldehyde and then dehydrated in 80% ethanol. By using a microcomputed tomography (μCT) 100 scanner (isotropic voxel size of 10 μm, 70 kVp, 200 μA, integration time of 200 ms; Scanco Medical, Switzerland), femora were analyzed as previously described[11 ]. Determination of the trabecular and cortical bone volume (BV) fractions [BV/total volume (TV)], BMD, thickness (trabecular thickness), trabecular number and trabecular separation was performed using established analysis protocols, and the μCT parameters were reported according to international guidelines.
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3

Wheat Spike Microstructure Analysis

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For each treatment, twelve representative, fully dried primary spikes were selected for scanning and placed in plastic holders (34 mm diameter, 70 mm height). The majority of the spikes were too tall to fit in the holders so they were cut into two pieces and each scanned separately. Pieces of thermoplastic starch were used to eliminate sample movement while scanning. Sample preparation and loading into the scanner takes around 30 min per 12 samples and after this time there is no more user input. The twelve holders were loaded into the sample changing carousel of a μCT100 scanner (Scanco Medical, Switzerland). This scanner has a cone beam X-ray source with power ranging from 20 to 100 kVp (pre-set and calibrated for 45, 55, 70, 90 kVp) and a detector consisting of 3072 × 400 elements (48 µm pitch) and a maximum resolution of 1.25 µm. The samples can be positioned at different distances from the X-ray source greatly improving resolution while keeping scanning time to a minimum. Spikes were scanned with the X-ray power set at 45 kVp and 200 µA with an integration time of 200 ms. Each spike was ~ 1000 slices (51 slices per stack), 125 projections/180° were taken and a binning of 6 was used. Output images were produced with a 0.2 megapixel (512 × 512) resolution (68.8 µm/pixel) in a proprietary ISQ file type format (Scanco Medical, Switzerland).
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4

3D Volume Reconstruction from Projections

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The 3D volume was reconstructed from the projections (raw data, including flat field correction data) using proprietary software supplied with the Scanco μCT100 scanner. After 3D volume generation, the developed processing pipeline makes use of standard computing hardware. A DELL XPS desktop computer with an Intel (i7 6700k) 64 bit CPU, 64 GB of memory and an NVIDIA GPU (GTX 1080) was used.
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5

Internode Structure Analysis via μCT

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For seven of the eight genotypes used here, a representative tiller was collected at the senesced stage. For each selected tiller, a mid-section of the third internode was taken for X-ray micro computed tomography scanning (μCT) and placed in a sample holder. The holders were loaded into the sample carousel of a μCT100 scanner (Scanco Medical, Switzerland) [37 (link)]. Internode sections were scanned with the X-ray power set at 45 kVp and 200 μA with an integration time of 200 ms. For each section, 117 slices were acquired at a resolution of 4.9 μm/pixel. Output images were processed with the Fiji software [38 (link)]: image stacks, comprising of 117 slices, were converted to an average intensity Z-projection image with auto-adjusted brightness and contrast.
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6

Microstructural Analysis of Bone Callus

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At 4 weeks postoperatively, five rats from each group were killed and the sample harvested in preparation for the radiographic and histological studies. Bone samples were examined with a μCT-100 scanner (Scanco Medical, Switzerland) with a resolution of 24 μm and analyzed using the accompanying supporting analysis and three-dimentional imaging software to evaluate callus formation. The bone volume fraction (BV/TV) and the trabecular thickness (Tb.Th) were calculated by standard three-dimensional microstructural analysis [25 (link), 26 (link)].
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7

Micro-CT Analysis of Calvarial Bone Regeneration

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Micro-computed tomography (micro-CT) scans were taken for quantitative and qualitative evaluation of new bone formed in calvarial critical-sized defects with different formulations of HG, using the μCT 100 scanner (SCANCO Medical AG, Brüttisellen, Switzerland), which operated with a cone-beam originating from a 5 μm focal-spot X-ray tube. The photons were detected by a CCD-based area detector and the projection data were computer-reconstructed into a 3072 × 3072 image matrix. A 0.5 mm aluminium filter was used for taking optimized images. For each sample, at least 1500 projections/180° of X-rays (90 kVp, 200 µA, integration time 275 ms, scanning time at least 39 min) were acquired. The sample was segmented based on its grey scale values in the CT slices. The volume of interest was defined by a cylindrical contour, diameter was defined by the diameter of the drill hole (14 mm) and the height was defined by chosen the same number of slices for every sample (300 slices, 7.35 mm). The evaluation was done twice, first with a threshold of 250 to segment the BL granules only and secondly with a lower threshold of 150 to segment the new bone and the BL granules.
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8

Micro-CT Imaging of Wheat Spikes

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From the genotypes selected, fully dried, representative spikes were chosen for μCT scanning. Spikes were placed in plastic holders (34 × 70 mm tubes) and imaged using a μCT100 scanner (Scanco Medical, Switzerland). Spikes were scanned with the X‐ray power set at 45 kVp, 200 μA and 9 W with an integration time of 200 msec. Each spike was ~1000 slices (51 slices per stack), 125 projections/180° were taken and a binning of 6 was used. Output images were produced with a 0.2 megapixel (512 × 512) resolution (68.8 μm/pixel) in a proprietary ISQ file type format (Scanco Medical, Switzerland).
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9

Murine Tibial Bone Microarchitecture Analysis

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The tibias of mice were collected and fixed in 4% PFA at the end of the animal experiments. The left tibias were scanned using a μCT-100 scanner (Scanco Medical, Bassersdorf, Switzerland) with the following settings: 50 kV source voltage, 75 μa source current, and 9 μm pixel size. The 3D images of the tibias were then reconstructed and analyzed using Skyscan CT software (Bruker, Kontich, Belgium). Bone parameters of the region of interest below the tibial growth plate, which included bone volume/tissue volume (BV/TV), trabecular number (Tb.N), trabecular thickness (Tb.Th), and trabecular spacing (Tb.Sp) were assessed.
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10

Micro-CT Analysis of Murine Femoral Bone

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The femurs of mice in the three groups were scanned by using the ScancoμCT100 scanner (Scanco Medical AG, Bassersdorf, Switzerland). The scan parameters were as follows. The X-ray energy was set to −70 kV and 200 mA, the exposure time was −300 ms, and the region of interest was set to 10 μm around the metaphysis of the talus. According to the two-dimension data, the cone-beam reconstruction software (SkyScan) was adopted to reconstruct CT images into three-dimensional images. From the three-dimensional images, the ratio of bone volume to tissue volume (BV/TV), the structural model index, trabecular number (Tb.N), trabecular thickness (Tb.Th), and trabecular separation (Tb.Sp) were measured and analyzed.
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