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9 protocols using murine ifn β

1

Type I Interferon Priming of Fibroblasts

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Untransduced, luciferase-, ISG15-, and ISG15ΔGG-transduced fibroblasts (Figs 1, 2, 3) were primed by incubation with 0, 10, 100, or 1,000 IU ml−1 IFN-α2b (Merck IntronA) in normal growth medium for 12 h. The IFN-α2b was then eliminated by thorough washing with PBS and the cells were allowed to rest for 36 h in normal medium before infection. Murine embryonic fibroblasts were primed with 1,000 U universal type-I IFN (Fig. 3; PBL IFN) or 500 pM murine IFN-β (Fig. 4; PBL IFN). Mouse bone marrow macrophages were primed with 250 pM murine IFN-α4 (Fig. 4; Calbiochem). LL171 cells were primed with 10 pM murine IFN-β (Fig. 4; PBL IFN).
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2

Immune Response Modulation Reagents

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Human IL-1β and murine tumor necrosis factor (TNF)-α were from Peprotech, Inc. (Frankfurt, Germany). Murine IFNβ was purchased from PBL (New York, USA) and APAP from Sigma-Aldrich (Taufkirchen, Germany). Inhibitor-κB kinase (IKK)-VII inhibitor was from Calbiochem/Merck Millipore (Darmstadt, Germany).
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3

Measuring IFIT1 promoter activity

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MEF cells were cotransfected with the pRL-null Renilla (Renilla luciferase, internal control), the IFIT1prom-pGL3 firefly luciferase reporter (54 (link)), and the indicated FLAG-tagged IRF9WT or mutant expression plasmid using the TransIT-LT1 transfection reagent (Mirus). At 8 h posttransfection, cells were stimulated for 16 h with 200 U/mL murine IFNβ (PBL Assay Science). Luciferase activities were quantified using the dual luciferase reporter assay kit (Promega). Relative luciferase activities were calculated as the firefly luciferase/Renilla ratio. Protein extracts were subjected to SDS–PAGE electrophoresis and analyzed by immunoblot using the anti-Flag M2 (F1804; Sigma-Aldrich) and anti-actin (A5441; Sigma-Aldrich) antibodies. Immunoreactive bands were visualized using the Western Lightning Chemiluminescence Reagent Plus (Perkin-Elmer Life Sciences) acquired on an ImageQuant LAS 4000mini apparatus (GE Healthcare).
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4

Murine Macrophage Isolation and Stimulation

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Primary murine macrophages were prepared by culturing bone marrow (BM) cells in RPMI 1640 or DMEM (Invitrogen-GIBCO; Grand Island, NY), 10% FCS (Hyclone, Logan, UT), Penn/Strep (P/S; GIBCO) and 20% L929 conditioned media for day 7-10 cultures, as previously reported (17 (link), 32 (link)). Cells were stimulated with murine IFN-αA/D (1000 U/ml; PBL, Piscataway, NJ), which is active on human and murine cells, murine IFN-β (250 U/ml; PBL) or murine IFN-γ (50 U/ml; PBL). In some IFN-I treated cells, the JAK inhibitor tetracyclic pyridone 6 (P6; 2 μM; Calbiochem, La Jolla, CA) was added 1 or 4 hours prior to harvest. Some macrophages were immortalized with a v-myc/v-raf expressing retrovirus (33 (link)).
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5

Cytokine Profiling of Viral Infections

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THP-1 cells were infected with VSV (MOI = 0.05) for 16 h. The supernatant was collected and used to determine cytokine concentration.
Mice were infected with HSV-1 or VSV and sera were collected at 8 h post-infection for cytokine detection.
ELISA kit was used to determine the concentration of human IFN-β (PBL Assay Science), murine IFN-β (PBL Assay Science), CCL5 (R&D systems), and IL-6 (BD Biosciences) according to the manufacturer’s instructions.
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6

HMPV Infection and IFN Treatment

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For cell experiments, cells were inoculated with HMPV strain TN/94-49 at an MOI of 1–10 in a 24-well plate. Mock-infected cells were inoculated with media or LLC-MK2 cell lysate, which had an equivalent effect on STAT1 and STAT2 protein levels and phosphorylation [30 ]. Then, 16–24 h post-infection, cells were treated with 1000 U/mL human IFNα (Alpha 2a) (PBL; Piscataway, NJ, USA) for human and primate cells, or 1000 U/mL murine IFNβ (PBL) for mouse cells for 30–40 min. After treatment, media were aspirated from the tissue culture dish and cells were lysed in RIPA buffer (ThermoFisher; Waltham, MA, USA) for western blotting or fixed in 4% paraformaldehyde for immunofluorescence.
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7

Isolation and Characterization of Murine Peritoneal Cells

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Peritoneal cells were isolated from naïve mice by lavage using 10 mL of ice cold PBS from the peritoneal cavity. Non-tissue culture treated suspension plates were used to minimize cell adherence for experiments involving flow cytometric surface expression analysis. For experiments using western blot analysis, peritoneal cells were placed on tissue-culture treated plates for several hours to ensure adherence by the macrophages and non-adherent cells were removed by vigorous washes with PBS. Cells were cultured in DM10 media (DMEM supplemented with 10% FBS, 1% sodium pyruvate, 1% L-glutamine, 1% penicillin/streptomycin). In experiments evaluating IFNGR1, cells were treated with 100 Units (U)/mL murine IFNβ (PBL, #12401–1) for 6–8 hrs. For experiments evaluating MHC II up regulation cells were treated ± 100 U/mL IFNβ for 6–8 hrs followed by treatment with 100 U/mL murine IFNγ (LifeTechnology, #PMC-4031) for 18–24 hrs. For MHC I expression, cells were treated with 100 U/mL IFNβ for 24 hrs.
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8

Colony Formation Assay of Ovarian Cancer

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For the colony formation assays, the murine OC cell lines used were ID8 wild-type, ID8 Trp53-/-, and HGS2 (Trp53-/- Pten-/- BrCa2-/-); 1e5 cells were plated per well in 6-well plates and cultured in the appropriate media. The cells were treated with Dac, 5-Aza, and murine IFN-β (PBL, 12405-1). The treatments were done in triplicate (3 wells per treatment) for 3 days and were collected on day 10. Media was aspirated and cells were fixed with 4% paraformaldehyde/PBS (Thermo Scientific, J61899AK), which was left on for 5 min then aspirated. Cells were stained with 0.05% w/v crystal violet (Sigma, C0775-25G mixed into a 20% methanol and 80% deionized water solution) for 20 min, washed with water, and then the plates were photographed.
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9

Interferon-beta Modulation of Tumor Cells

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Monolayers of tumor cells were treated with 250 U/mL of murine IFNβ (PBL interferon source, Piscataway, NJ, USA) 4 h prior to virus infection. The production of IFNβ by tumor cells was quantified using the ELISA mouse IFNβ kit (R&D systems, Minneapolis, MN, USA) following the manufacturer’s protocol. The samples were generated by pre-treating the cells with PAC as described above and infecting them for 24 h at an MOI of 0.1.
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