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8 protocols using gpx 1

1

Quantifying Hippocampal Protein Levels

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Levels of protein expression of hippocampal tissue (including whole tissue cell lysate, cytosolic or nuclear fractions) were carried out as previously described [23 (link)]. The optical density of the bands was measured and quantified by Image J (National Institute of Health, MD, USA). Primary antibodies of SOD-2, GPx-1, NFκB p65 and p50, IκBα, TNFα, IL-1β, IL-6 and COX-2 were purchased from Santa Cruz Biotechnology, CA, USA; Synapsin-1 and Synaptophysin were purchased from Novus Biologicals, USA; PSD95 and Cleaved Caspase 3 was purchased from Cell Signaling Technology; Cleaved PARP1 was purchased from Bioworld Technology; IDO-1 was purchased from antibodies-online (ABIN1714836). The data were expressed as percentage of the control.
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2

Immunohistochemical Analysis of Periodontal Proteins

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Maxillae tissue was deparaffinized and rehydrated. Gingival and periodontal tissue slices (4 μm) were washed with 0.3% Triton X-100 in phosphate buffer, quenched with endogenous peroxidase (3% hydrogen peroxide), and incubated overnight at 4°C with primary antibodies against the following proteins (all antibodies 1:400): receptor activator of the NF-κB ligand (RANKL), superoxide dismutase-1 (SOD-1), receptor activator of NF-κB (RANK), glutathione peroxidase-1 (GPx-1), osteoprotegerin (OPG), matrix metalloproteinase 2 (MMP-2), cathepsin K, and cyclooxygenase-2 (Santa Cruz Biotechnology, INTERPRISE, São Paulo, SP, Brazil) and incubated for 30 min with a streptavidin/horseradish peroxidase-conjugated secondary antibody (Biocare Medical, Concord, CA, USA). Immunostaining was visualized using colorimetric detection (Biocare Medical, Dakota, USA). The staining status was identified as either negative or positive; positive staining was defined as the presence of brown chromogen. Staining intensity and the proportion of immunopositive cells were examined independently by two pathologists by light microscopy and recorded. Intensity of staining (IS) was graded on a 0 to 2 scale according to the following semi-quantitative assessment: 0 = no detectable staining, 1 = weak staining; 2 = strong staining.22
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3

Hippocampal Protein Expression Analysis

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Protein expressions of hippocampal tissue lysate (including cytosolic and nuclear fractions) were performed as previously described [26 (link)]. The expression of β-actin served as the internal control for whole cell lysate and cytosolic fraction protein, whereas Lamin B1 served as the internal control of nuclear fraction protein. Primary antibodies of SOD-2 (rabbit polyclonal, 1:1000), GPx-1 (goat polyclonal, 1:500), NFκB p65 (rabbit polyclonal, 1:250) and p50 (mouse monoclonal, 1:250), IκBα (mouse monoclonal, 1:500), TNF α (goat polyclonal, 1:80), IL-1β (rabbit polyclonal 1:100), IL-6 (goat polyclonal, 1:1000) and COX-2 (goat polyclonal, 1:100) were purchased from Santa Cruz Biotechnology, CA, USA; Synapsin 1 (rabbit polyclonal, 1:500) and Synaptophysin (rabbit polyclonal, 1:2000) were purchased from Novus Biologicals, USA; PSD95 (rabbit polyclonal 1:500), Cleaved Caspase 3 (rabbit polyclonal 1:500) was purchased from Cell Signaling Technology; Cleaved PARP-1 (rabbit polyclonal, 1:2000) was purchased from Bioworld Technology; IDO-1 (rabbit polyclonal, 1:250) was purchased from antibodies-online (ABIN1714836). The optical density of the bands was measured and quantified by Image J (National Institute of Health, MD, USA). The data were expressed as percentage of the control.
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4

Quantifying Antioxidant Protein Levels

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Western blots were performed as previously described [36] (link). Briefly, 5–20 μg of protein were loaded per sample and heat denatured for 10 min at 90–99 °C. Following electrophoresis, the proteins were transferred onto nitrocellulose membranes and electroblotted for 1 h at 100 V. Membranes were blocked overnight with 5% dry milk in TBS with 0.1% Tween-20. Membranes were probed with the primary antibody and anti-actin (BD Biosciences, Mississauga, ON, Canada) antibody, as a loading control, for 2 h. The antibodies were purchased from Abcam (Cambridge, MA) and Santa Cruz (Santa Cruz, CA) and used at the following dilutions: catalase (AB16731) 1:1000; SOD1 (AB16831) 1:5000; SOD2 (AB13534) 1:3000; GPx1 (AB16798) 1:1000; p67phox (SC15342) 1:100. A horseradish peroxidase-conjugated secondary antibody (Amersham, Piscataway, NJ) was used and visualized using enhanced chemiluminescence detection according to the manufacturer's instructions (ECL Plus, Amersham). Densitometry was performed on scanned images of X-ray film (Kodak XAR) using ImageJ v1.34s software.
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5

Oxidative Stress Protein Analysis

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Protein was extracted from quadriceps muscle and cell culture lysate, subjected to SDS-PAGE, and transferred to nitrocellulose membranes. Membranes were incubated with a polyclonal antibody against glutathione peroxidase (GPx1), superoxide dismutase (SOD2) (Santa Cruz Biotechnology, Santa Cruz, CA), NOX2, 3-NT, eNOS (Santa Cruz Biotechnology, Santa Cruz, CA), and GAPDH (Santa Cruz Biotechnology, Santa Cruz, CA) overnight at 4°C, followed by incubation with an appropriate secondary antibody. Proteins were visualized with an ECL western blot detection system (Thermo Scientific, Waltham, MA). For detection of eNOS dimers, we ran a low-temperature SDS-PAGE (LT-PAGE) gel using reported procedures [20 (link)] with slight modification. The protein lysates were prepared using 1× Laemmli buffer without 2-mercaptoethanol. The samples were then subjected to SDS-PAGE with 7.5% gel and run at a low temperature by keeping the buffer tank surrounded by ice. The gels were transferred, and the blots were probed as described above.
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6

Proteomic analysis of neuronal lysates

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Whole cell lysates from primary neurons and AFSC-EV were processed as previously described [25 (link)]. Primary antibodies were raised against the following molecules: Actin, Nox4 (Sigma-Aldrich, St Louis, MO, USA), Akt, SOD1, SIRT1, gp91phox, TrxR1, TrxR2, Gpx1, LC3β, PARP, TIA-1 (Santa Cruz Biotechnology, CA, USA), pAktser473 (Cell Signaling Technology, MA, USA), β-Amyloid clone 6E10 (Bio Legend, CA, USA), pTauser422 (OriGene Technologies, MD, USA), Rab5 (Lonza, SC, USA), CD9 (Life Technologies, CA, USA), CD81 (Thermo Fisher Scientific, MA, USA), Bcl-2 (Bio Source, CA, USA).
Secondary antibodies, used at 1 : 3000 dilution, were all from Thermo Fisher Scientific (Waltham, MA, USA).
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7

LPS-Induced Inflammatory Response Assay

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The following materials were used in the study: LPS from Escherichia coli O111:B4, Griess reagent, and Giemsa solution (all from Sigma-Aldrich, St. Louis, MO, USA); antibodies specific for TLR4, p- mitogen-activated protein kinase 7 (TAK1), TAK1, p-IKK α/β, IKK α/β, IL-1β, COX-2, p-NF-κB, NF-κB, p-ERK1/2, and ERK1/2 (all from Cell Signaling Technology, Danvers, MA, USA); antibodies specific for iRAK4, TRAF6, SOD1, GPx1, p-Raf-1, and GAPDH (all from Santa Cruz Biotechnology, Dallas, TX, USA); IL-1β, TNF-α, IFN-γ cytokine kit, PerCP/Cyanine5.5 anti-mouse Ly6G, and Alexa-647 anti-mouse CD11b (all from BioLegend, San Diego, CA, USA); and PE anti-mouse Ly6C (BD Biosciences, Becton, NJ, USA).
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8

Western Blot Analysis of Protein Expression

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Western blot analysis was performed as previously described (26 (link)). The membrane was incubated with specific primary antibodies directed against the following proteins: p50, GPx-1, heme oxygenase (HO)-1, STAT3, histone H1 and β-actin (Santa Cruz Biotechnology, CA, USA), p65, inducible nitric oxide synthase (iNOS) and COX-2 (Abcam, Cambridge, MA, USA), and p-IκBα, IκBα and p-STAT3 (Cell Signaling, Beverly, MA, USA). Histone H1 and β-actin were used as loading controls. Band intensities were measured using the Fusion FX7 image acquisition system (Vilber Lourmat, Eberhardzell, Germany). Western blot band intensities were quantified using ImageJ software (NIH; Bethesda, MD, USA). Information on the antibodies used is provided in Supplementary Table S1.
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