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157 protocols using rosettesep

1

CTC Enrichment and Expansion from EDTA Blood

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CTCs were enriched from 7.5 ml of EDTA blood by Rosette Sep (StemCell Technologies) according to the manufacturer's instructions but using 20 μl of Rosette Sep solution per ml of blood instead of 50 μl/ml. The cell pellet gained from Rosette Sep enrichment was resuspended in 3 ml of RPMI complete medium. RPMI complete comprises RPMI 1640 (Gibco), 10% Fetal Calf Serum (FCS) (Gibco), 1% penicillin‐streptomycin mix (Gibco), 1% l‐glutamine (Gibco), 1% Insulin‐Transferrin‐Selenium‐A Supplement (100X) liquid (Life Technologies), 10 ng/ml FGF2 (Miltenyi), 50 ng/ml EGF (Miltenyi), 0.1 μg/ml hydrocortisone (Sigma‐Aldrich), and 0.2 μg/ml cholera Toxin (Sigma‐Aldrich). Additional information is provided in Appendix Supplementary Methods. The cell solution was distributed into a 96‐well plate and cultured in standard cell culture conditions (37°C, 5% CO2). After 14 days of cell culture, medium was changed. At 90% confluence, outgrowing cells were transferred to a 12‐well cell culture dish and expanded.
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Isolation and Expansion of Human Regulatory T Cells

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Anonymous healthy donor blood was obtained from the National Blood Service (NHS Blood and Transplantation, London, United Kingdom) with informed consent and ethical approval (Institutional Review Board of Guy’s Hospital; reference 09/H0707/86). RosetteSepTM (StemCell Technologies, Cambridgeshire, United Kingdom) was used to select CD4+ T cells. Subsequently, CD25 Microbeads II (Miltenyi Biotec, Surrey, United Kingdom) were used to separate CD4+CD25+ (Tregs, Supplementary Figures S1A,B,E) and CD4+CD25 (Teffs, Supplementary Figures S1C,D) cells. Tregs were cultured and expanded for 20 days as previously reported (Scottà et al., 2013 (link)). Briefly, isolated Tregs were cultured in X-VIVO 15 medium (Lonza, Berkshire, United Kingdom) supplemented with 5% heat-inactivated human AB serum (Biosera, Sussex, United Kingdom) in the presence of anti-CD3/CD28-coated beads (Thermo Fisher Scientific, Paisley, United Kingdom), 100 nM rapamycin (LC-Laboratories, MA, United States) and 1000 U/mL recombinant IL-2 (Proleukin-Novartis, Camberley, Surrey, United Kingdom). Teffs were cultured in the same media in the presence of anti-CD3/CD28-coated beads and 100 U/mL recombinant IL-2. All cell cultures were tested for mycoplasma and all samples used were mycoplasma free.
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3

Monocyte-derived Dendritic Cell Generation

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To generate human monocyte-derived DCs, buffy coats from healthy blood donors were incubated with monocyte enrichment cocktail (RosetteSepTM, StemCell Technologies), followed by centrifugation on density gradient medium (LymphoprepTM, StemCell Technologies). The in-between layer containing monocytes was transferred and washed twice with phosphate buffered saline (PBS). The residual red blood cells were removed by using red blood cell lysis buffer (15 mM NH4Cl, 1.4 mM NaHCO3, 0.03 mM EDTA, pH7.3). The cell population obtained was composed mainly of CD14+ (DakoCytomation) with < 1% CD3+/CD19+ cells (BD), as evaluated by flow cytometry (FACS-Calibur, BD). DCs were generated by culturing the purified population in DMEM supplemented with 75 ng/ml GM-CSF (PeproTech) and 30 ng/ml IL-4 (PeproTech) for 6 days. The medium was changed after 3 days in culture.
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Isolation and Injection of Human Tregs

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PBMCs where isolated from buffy coats using ficoll density gradient isolation (Lymphoprep, Nycomed-Pharma AS, Oslo, Norway). To isolate human CD4+ CD25hi Treg, first CD4+ T cells were enriched using the RosetteSepTM (StemCell™ Technologies, Vancouver, Canada) human CD4+ T cell enrichment cocktail according to the manufacturers description, followed by high purity CD4+CD25high cell sorting using a BD FACSAria cell sorter (BD Biosciences, Erembodegem, Belgium). For this purpose, cells were labeled with CD4-BV510 and CD25-Pe-Cy7(M-A251; BD Biosciences, New Jersey, USA). This typically resulted in >96% pure CD4+CD25hi cells and more than 90% of these cells were FOXP3+. Without ex vivo expansion, high purity sorted Treg (or PBS, vehicle control) were injected intradermally in the mouse skin at 4 spots closely around the human skin graft, in a total volume of 100 µl PBS.
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5

Isolation and Expansion of Donor NK Cells

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Fresh healthy donor NK cells were purchased from AllCells with either CD56 positive selection or CD56 negative selection (Allcells, cat#PB012-P or PB012-N). For 2D migration experiments, NK cells were enriched from peripheral blood using RosetteSep (StemCell Technologies) from healthy adult donors. T cells, B cells and monocytes were isolated from PBMCs (AllCells) using Mojosort magnetic cell separation system from Biolegend via CD3 positivity (Biolegend, cat#480133), CD19 positivity (Biolegend, cat#480105), CD14 positivity (Biolegend, cat#480093). PBMC purity was assessed using flow cytometry: CD3-APC (Biolegend, cat#300411), CD14-BV421 (Biolegend, cat#325627), CD45-FITC (BD Bioscience, cat#347463), CD56-PE (BD Bioscience, cat#555516), CD20-PE (BD Bioscience, cat#555623). For donor NK cell lysis of PANC-1 clusters, primary donor NK cells were purchased from AllCells then expanded using irradiated K562–4-1BBL-mbIL-21 (names “CSTX002”) cells kindly provided by Dr. Dean Lee according to his protocol58 (link).
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6

NK Cell Degranulation Assay with PBMC

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On day 6 PBMC, either GAD65 AA 114–122 or FLU peptides stimulated for 4 days, additionally cultured for two days in the presence of IL-2 (100 IU/ml), were co-cultured with pulsed or unpulsed APCs at 1:3 (PBMC:APCs) ratio in 96 well round bottomed culture plates (Corning Incorporated, Corning, NY 14831–001, USA) for 2 and half hours in RPMI 10% FBS complete medium (see above) additionally supplemented with GolgiStop reagent (1:500 dilution, BD Biosciences). An experimental positive control was set-up by NK cell isolation from PBMC of a HD volunteer previously obtained with the RosetteSep method (Stem Cell Technologies, Vancouver, Canada) and FicollPaque Plus (Lympholyte, Cedarlane Laboratories, Burlington, Ontario, USA). Isolated NK cells have been routinely checked for the percentage of CD3-CD56+ cells by FACS analysis and those with purity greater than 90% were cultured with 200 IU/ml of recombinant human IL-2 (Sigma-Aldrich) at 37°C and used up to 5 days after isolation as effectors in degranulation assay. Isolated NK cells were then co-cultured with K562 cells (American Type Culture Collection, ATCC), a tumoral cell line known to induce NK cell degranulation according to standard protocols, as control target [41 (link)], and with either GAD65 AA 114–122 peptide pulsed and unpulsed APCs.
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7

NK Cell Activation Assay for ZEBOV-GP

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3μg/ml of ZEBOV-GPΔTM was coated on a Maxisorp ELISA plate. Plates were blocked with 5% BSA prior to addition of Abs for 2 hours at 37C. Human NK cells were enriched from peripheral blood by negative selection using RosetteSep (Stem Cell Technologies) followed by Ficoll separation. The Abs were removed and the wells washed prior to addition of NK cells. The NK cells were added at 5 × 104 cells/well in the presence of brefeldin A (Sigma Aldrich), GolgiStop (BD), and anti-CD107a and incubated for 5 hours at 37C. NK cells were stained for surface markers of NK cells (CD3, CD56, CD16, BD Biosciences), followed by intracellular staining to detect the production of cytokines and chemokines (IFNγ and MIP-β, BD Biosciences). Cells were analyzed by flow cytometry on a BD LSR2 flow cytometer and data was analyzed using FlowJo software.
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8

Isolation of NK Cells from Whole Blood

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NK cells were isolated from heparinized whole blood from malaria-naïve healthy donors with RosetteSep (Stemcell Technologies, Canada) and density gradient separation via Ficoll (Bio-Strategy Lab, Australia) centrifugation according to manufacturer’s protocols.
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9

Cell Line Characterization and Engineering

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TT, MZ-CRC1, K562, HaCaT, and Nalm6 cells were obtained from ATCC. Jurkat cells stably expressing an NFAT-driven GFP reporter were a kind gift of Arthur Weiss (University of California, San Francisco). K562-CD19 and TT-CD19 cells were generated by transduction with a lentivirus encoding human CD19.27 (link) K562 cells expressing GFRα1, GFRα2, and GFRα3 were constructed by transduction with lentiviruses containing GFP followed by a T2A sequence, followed by the GFRα1/2/3 coding sequences. Nalm6 cells were transduced with a lentivirus encoding CBG luciferase and, where indicated, a lentiviral vector encoding GFRα4a or GFRα4b. All cell lines were cultured in RPMI1640 containing 10% fetal bovine serum, 10 mM HEPES, and 1% penicillin/streptomycin.
Primary human T cells, collected from healthy volunteer donors, were obtained from the Human Immunology Core at the University of Pennsylvania. Bulk T cells were isolated by negative selection using RosetteSep (StemCell Technologies, Vancouver, BC, Canada).
Human primary keratinocytes isolated from human foreskin were obtained from the University of Pennsylvania Dermatology Core. Murine keratinocytes were isolated according to a published method.44
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10

Enrichment of Human NK Cells

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Human NK cells were enriched from human peripheral blood samples using negative selection with RosetteSep (Stem Cell Technologies) followed by Ficoll separation.
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