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83 protocols using tyrode s solution

1

Isolation of Single Muscle Fibers

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Single fibers were prepared from FDB muscles of YS and WT mice according to a modified collagenase-dissociation method previously described (Defranchi et al., 2005 (link)). Briefly, FDB muscles were dissected and incubated at 37°C for 1–2 h in 0.2% collagenase in Tyrode’s solution (Sigma–Aldrich, Milano, Italy) containing 10% fetal bovine serum (Sigma–Aldrich, Milano, Italy). After digestion, collagenase was removed by 3 min wash with Tyrode’s solution, then muscles were incubated for 15 min in Tyrode’s solution containing 10% fetal bovine serum to completely block the collagenase activity, and finally washed again for 3 min in Tyrode’s solution. Fibers were dissociated using Pasteur pipettes of decreasing diameter, plated on laminin-coated glass coverslips positioned at the center of 35-mm dishes, and incubated overnight at 37°C in Tyrode’s solution supplemented with 10% heat-inactivated FBS and 1% antibiotic–antimycotic solution (10,000 units penicillin, 10 mg streptomycin, and 25 μg amphotericin B) (Sigma–Aldrich, Milano, Italy).
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2

Patch-clamp Electrophysiology Protocol

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Cultures were bath perfused with Tyrode’s solution (in mM, all from Sigma): 150 NaCl, 4 KCl, 2 MgCl2, 2 CaCl2, 10 glucose, 10 HEPES, pH adjusted to 7.4 with NaOH. Whole-cell electrodes pulled from borosilicate glass capillaries had an open tip resistance of 2 to 5 MOhm when filled with one of the following internal solutions (in mM, all from Sigma): (1) 140 K-glucuronate, 10 NaCl, 5 MgCl2, 0.2 EGTA, 5 Na-ATP, 1 Na-GTP, 10 HEPES, pH adjusted to 7.4 with KOH; (2) 140 Cs-glucuronate, 5 CsCl, 5 MgCl2, 10 EGTA, 5 Na-ATP, 1 Na-GTP, 10 HEPES, pH adjusted to 7.4 with CsOH; or, (3) 120 tetraethylammonium (TEA) chloride, 5 MgCl2, 5 Na-ATP, 1 Na-GTP, 10 EGTA, 10 HEPES, pH adjusted to 7.4 with TEA-hydroxide. Current and voltage were recorded with an Axopatch 200A amplifier, filtered at 1 kHz, digitized at 10 kHz and analyzed off-line with Clampfit software (pClamp 9.2). Voltage-gated channel antagonists tetrodotoxin (TTX, Sigma) and 4-aminopyridine (4-AP, Sigma) were dissolved in Tyrode’s solution and delivered under gravity flow from a local perfusion pipette (Kim et al. 2009 (link)). Ligand-gated channel agonists were dissolved in 160 NaCl, 10 HEPES, 2 CaCl2 at 100 µM and also applied by local perfusion.
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3

Functional Characterization of Electrically Stimulated Myocytes and Motoneurons

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MEF-transdifferentiated myocytes and motoneurons were assessed for functionality and response to electrical stimulation using calcium imaging. Cells were stained with 5 μg/mL Fluo-4 AM (ThermoFisher) diluted in pre-warmed Tyrodes Solution (Sigma) for 30 minutes and washed twice with Tyrodes Solution prior to imaging. Cells were electrically stimulated every 10 seconds by 2 stimuli of 2 millisecond duration and a gap of 300 milliseconds between the two stimuli. A concentric electrode (FHC, Inc) was positioned about 100 μm away from an area on interest, and the amplitude of the electrical signal was set to 0.5 V. For motoneuron stimulation study, Concentration of TTX was 0.5 μM. Concentrations of glutamate and nicotine used in the control experiment for the coculture were 0.1 mM and 10 μM, respectively. Videos were taken on the Olympus IX81 using the Pike camera at 100 frames per second via the SPLASSH software16 (link). Videos were imported into a custom MATLAB R2016b software that allowed users to measure average fluorescence intensity in an area of interest for each frame, yielding calcium intensity over time.
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4

Derivation and Culture of Stem Cells from Blastocysts

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After the culture of semi-cloned embryos in KSOM medium for 4–5 days, each blastocyst was transferred on MEFs in serum plus LIF medium, which component was previously described [34 ]. For unhatched blastocysts, zona pellucida was removed by the treatment with the Tyrode’s solution (Merck) before the transfer. After the expansion of blastocyst outgrowth, cells were maintained on MEFs until the passage 5. After the passage 5, scESCs were maintained on gelatin-coated plates without MEFs in serum plus LIF medium. Karyotyping by flow cytometry and chromosome counting was performed for scESCs at the passage 9.
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5

Single-Cell Isolation Protocol for Cleavage-Stage Embryos

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The ZP was removed from each embryo by exposure to acidified Tyrode's solution (EMD Millipore) and washed with Ca2+- and Mg2+-free phosphate buffered saline (PBS). Cleavage-stage embryos were disaggregated into single cells, polar bodies, and cellular fragments if present with Quinn's advantage Ca2+- and Mg2+-free medium with HEPES plus 10% human albumin (CooperSurgical) and 0.05% trypsin-EDTA (Thermo Fisher Scientific) as necessary. Each blastomere, polar body, and cellular fragment was washed with Ca2+- and Mg2+-free PBS and collected individually for transfer to a sterile UltraFlux PCR tube (VWR). All of the above was performed under a stereomicroscope equipped with a digital camera (Leica Microsystems), which has movie-making capabilities, to document the collection of every sample. Samples were put into tubes, flash frozen on dry ice, and stored at −80°C. Only embryos for which the disassembly process occurred effectively with no apparent loss of material were carried forward for library preparation and sequencing.
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6

Pharmacological Assessment of Vasodilator Mechanisms

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All the chemicals were 99.9% pure and of research-grade quality. Acetylcholine, carbachol, doxazosin, glibenclamide, isoprenaline, loperamide hydrochloride, phenylephrine, and potassium chloride were obtained from Sigma Chemical Co. (St Louis, MO, USA), while cromakalim was procured from Tocris, Ellisville, MN, USA. Castor oil was purchased from Karachi Chemicals (Karachi, Pakistan). The chemicals used to make the physiological solutions, i.e., Krebs solution and Tyrode’s solution, were procured from Merck (Dermstadt, Germany) and BDH (Poole, England).
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7

Measuring Neuronal Calcium Dynamics

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In order to identify potential of neuronal differentiation, we evaluated calcium in ux which is an indicator for neurotransmitter transmission. The intracellular calcium assessment was described in previous study (23) . The specimens were incubated with 3 µM Fluo-3 AM (Invitrogen) and 0.08% pluronic acid (Invitrogen) in DMEM/F-12, 100 U/mL Penicillin, 100 μM/mL Streptomycin at 37 o C for 60 minutes. Subsequently, the specimens were washed with DMEM/F-12, 100 U/mL Penicillin, 100 μM/mL Streptomycin, and PBS. The specimens were maintained in Tyrode's solution (5 mM KCl, 129 mM NaCl, 2 mM CaCl 2 , 1 mM MgCl 2 , 30 mM glucose, and 25 mM HEPES, pH 7.4) (All from Sigma-Aldrich). The neurotransmitter releasing ability of differentiated cells was simulated with 50 mM KCI. The intensity of calcium was recorded time-lapse at excitation 506 nm for 3 minutes by the Live-cell uorescence microscope, IX83XDC (Olympus), and interpreted using the ImageJ program (NIH).
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8

Evaluating Neuronal Calcium Dynamics

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In order to identify potential of neuronal differentiation, we evaluated calcium in ux which is an indicator for neurotransmitter transmission. The intracellular calcium assessment was described in previous study (23) . The specimens were incubated with 3 µM Fluo-3 AM (Invitrogen) and 0.08% pluronic acid (Invitrogen) in DMEM/F-12, 100 U/mL Penicillin, 100 μM/mL Streptomycin at 37 o C for 60 minutes. Subsequently, the specimens were washed with DMEM/F-12, 100 U/mL Penicillin, 100 μM/mL Streptomycin, and PBS. The specimens were maintained in Tyrode's solution (5 mM KCl, 129 mM NaCl, 2 mM CaCl 2 , 1 mM MgCl 2 , 30 mM glucose, and 25 mM HEPES, pH 7.4) (All from Sigma-Aldrich). The action potential ability of differentiated cells was simulated with 50 mM KCI. The intensity of calcium was recorded time-lapse at excitation 506 nm for 3 minutes by the Live-cell uorescence microscope, IX83XDC (Olympus), and interpreted using the ImageJ program (NIH).
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9

Contractile Response of bMTFs to Acetylcholine

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bMTF experiments were performed on a Leica MZ9.5 stereomicroscope (Wetzlar, Germany) with 0.63X magnification, coupled to a National Instruments LabVIEW data acquisition board which was programmed to capture the horizontal projection of the films by taking an image every 30 seconds through the course of the experiment using a Basler A601f-2 camera (Exton, PA). bMTF chips were transferred to a 35 mm Petri dish containing Tyrode’s solution (1.8 mM CaCl2, 5 mM glucose, 5 mM HEPES, 1 mM MgCl2, 5.4 mM of KCl, 135 mM of NaCl, and 0.33 mM of NaH2PO4 in deionized water, pH 7.4 at 37 °C; reagents from Sigma-Aldrich). Tyrode’s solution was allowed to cool below 32 °C to allow dissolution of the pNIPAAM layer. The bMTFs were then gently peeled and the dish was placed in a heated plate to re-equilibrate to 37 °C, allowing the films to reach a basal tone. For contractile studies, contraction was induced with cumulative dosing of acetylcholine chloride (Sigma-Aldrich) (ACh) dissolved in distilled water: 10 nM ACh, 100 nM ACh, 1 μM ACh, 10 μM ACh, 100 μM ACh, and 1mM ACh at ten minute intervals.
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10

Calcium Transients in hiPSC-Derived Cardiomyocytes

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hiPSC-CMs were purchased from Ncardia (Cor.4U cardiomyocytes, Ax-C-HC02-96) as living pre-plated cells seeded onto fibronectin-coated 96-well μClear plates (Greiner Bio-One, No. 655090) at a density (∼25,000 cells/well) suited to forming a confluent synchronously beating monolayer. Cor.4U cardiomyocytes represent a mix of 60% ventricular, 30% atrial, and 10% nodal cells according to the cell provider. Cells were cultured with Cor.4U culture medium (Ax-M-HC250) in a humidified incubator at 37°C and 5% CO2, with medium being changed once a day. On the day of the experiment, the culture medium was replaced with Tyrode's solution (Sigma, No. T2397) supplemented with 10 mM HEPES together with KCl to represent isokalemic (4.2 mM K+) conditions.
Table S1 contains the purchase information and free Cmax references for all the compounds used within this work. The preparation of drug solutions is explained in Supplemental Experimental Procedures. The calcium-sensitive fluorescence dye Cal-520 AM (Cat. No. 36,338; AAT Bioquest) was used to capture the intracellular calcium transients in hiPSC-CMs. The protocol was used as described in Kopljar et al. (2018) (link). Briefly, Cal-520 was incubated for 45 min followed by a washout and a 30-min recovery before starting the experiments.
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