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261 protocols using ab125011

1

Quantifying Protein Expression in Extracellular Vesicles

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Western blot analysis was used to measure CD9, TSG101, Calnexin, and LDLR expression, and the samples were normalized to tubulin. RIPA buffer was used to prepare the total protein. PVDF membranes (EMD Millipore, Billerica, MA, USA) were used to transfer the protein lysate that had been separated by 12% SDS-PAGE. The membranes were blocked for one hour, incubated overnight at 4 °C with primary antibodies against CD9 (13403S, 1:1000, CTS), TSG101 (ab125011, 1:1000, Abcam), Calnexin (ab125011, 1:1000, Abcam), LDLR (ab52818, 1:1000, Abcam), and beta-Tubulin (T0023, 1:1000, Affinity Biosciences), and then incubated with the corresponding secondary antibodies at 1:2000 dilution for 2 h at room temperature. Horseradish peroxidase (HRP)-conjugated goat anti-rabbit IgG (H + L) (#A0208, 1:2000 dilution, Beyotime) was the secondary antibody against CD9, TSG101, Calnexin and LDLR. HRP-conjugated goat anti-mouse IgG (H + L) (#A0216, 1:2000 dilution, Beyotime) was the secondary antibody against beta-Tubulin.
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2

Exosomal Protein Characterization Protocol

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CAFs-Exo total protein, hOMF-Exo total protein and Cal-27 total protein were extracted using RIPA buffer with PMSF (Beyotime, China). Protein concentration was quantified by BCA protein assay (Beyotime, China). The protein samples were subjected to SDS/PAGE electrophoresis and transferred on to PVDF membranes. After blocked with 5% skim milk, the blots were probed with primary antibodies. Primary antibodies included CD9 (ab92726, Abcam, UK), CD63 (510953, Zeneng, China), CD81 (ab125011, Abcam, UK), HSP90 (TA500494, ORIGENE, USA), TSG101 (ab125011, Abcam, UK), β-microtubulin (M20005. Abmart, China), fibroblast activator protein-α (FAP, 506349, Zeneng, China), α-smooth muscle actin (α-SMA, bsm-33178 M, BIOSYNTHESIS, China). After incubation with the appropriate horseradish peroxidase-conjugated secondary antibody in TBST at room temperature for 1 h, enhanced chemiluminescence reagents (Beyotime, China) were used to detect interactions. Blots were imaged with the Chemidoc Imager (BioRad, USA) and semiquantitative analysis was performed using Image J software (Version 2).
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3

Protein Expression Analysis in Breast Cancer

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RIPA lysis buffer (Biotime, Hangzhou, China) was used to obtain total proteins from BC tissues and cells, and the quality of the protein was determined by BCA kit (Pierce, USA). Proteins were separated by 10% SDS-PAGE, and were subsequentially transferred onto the PVDF membranes (Millipore, MA, USA). The membranes were blocked by 5% non-fat milk, and incubated with the primary antibodies against gp96 (1:1000, #ab227293, Abcam, UK), TSG101 (1:1000, #ab125011, Abcam, UK), p53 (1:2000, #ab1101, Abcam, UK), GAPDH (1:2000, #ab8245, Abcam, UK), CD63 (1:1500, #ab271286, Abcam, UK) and β-actin (1:2000, #ab179467, Abcam, UK) at 4°C overnight. In the second day, the membranes were probed with the secondary antibodies for 1h at room temperature, and an ECL system (Bio-Rad, CA, USA) was employed to visualize the protein bands. The expression levels of the proteins were normalized by GAPDH.
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4

Extracellular Vesicle Protein Analysis

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The sEV-enriched supernatant was denatured in 5× sodium dodecyl sulfonate (SDS) buffer and used for Western blotting (10% SDS-polyacrylamide gel electrophoresis; 10–30 µg protein/well). Antibodies against the following were used: CD63 (sc-5275; Santa Cruz Biotechnology, Dallas, TX, USA), HSP70 (ab181606; Abcam, England), TSG101 (ab125011; Abcam, England), and calnexin (10427-2; Proteintech, Rosemont, IL, USA). The wet rotation method was used, and the membrane was completely immersed in 3% bovine serum albumin (BSA)-TBST and gently shaken at room temperature for 30 min. The primary antibody was diluted with 3% bovine serum albumin (BSA)- Tris-buffered saline Tween (TBST), incubated at room temperature for 10 min, and placed at 4 °C overnight. On the next day, the membrane was incubated at room temperature for 30 min, followed by washing with TBST 5 times for 3 min each time, followed by incubation with the secondary antibody. Electrogenerated chemiluminescence reagents were added to the membranes, and signals were detected by an automatic chemiluminescence imaging system (Tanon 4600; Tanon Co., Ltd., Shanghai, China).
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5

Exosome Identification via Western Blotting

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Exosome-specific markers, including positive (CD9, CD63, and TSG101) and negative markers (GRP94), were used to identify exosomes by western blotting. Total proteins (25 µg) in the extracted resuspension of exosomes were sequentially subjected to gel electrophoresis (10% SDS-PAGE), membrane transfer, blocking, incubation with primary antibodies specific for CD9, CD63, TSG101, and GRP94 (ab92726, ab134045, ab125011, ab238126, Abcam, Cambs, UK), incubation with the goat anti rabbit secondary antibodies, and enhanced chemiluminescence (ECL) to examine exosomal protein expression (22 (link), 23 (link)).
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6

Protein Extraction and Western Blot Analysis

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Protein extraction and Western blot analysis were performed as described before.17 (link) Antibodies against specific proteins, including VEGF (Abcam, ab214424), PIAS3 (Cell Signaling Technology, 9042), p-STAT3 (Cell Signaling Technology, 9145), STAT3 (Cell Signaling Technology, 12640), CD63 (Abcam, ab134045) and TSG101 (Abcam, ab125011), were used.
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7

Exosome Marker Detection by Western Blot

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Western blot analysis for placental alkaline phosphatase, Tumor Suspectibility Gene 101 (TSG101) and CD63, which are enriched in exosomes, was carried out. Total protein was extracted using the lysis buffer Pro‐Prep (iNtRON Biotechnology, Seongnam, Korea), and 20 μg of protein was separated using a 10% sodium dodecyl sulphate–polyacrylamide gel electrophoresis transferred onto a polyvinylidene fluoride (PVDF) membrane (GE Healthcare, Piscataway, NJ, USA). The membrane was then incubated with primary antibodies, namely anti‐placental alkaline phosphatase (1:2,000, ab95462; Abcam, Cambridge, UK), anti‐TSG101 (1:3,000, ab125011; Abcam) and anti‐CD63 (1:2,000, ab59479; Abcam), followed by incubation with a horseradish peroxidase‐conjugated anti‐mouse or anti‐rabbit secondary antibody (1:10,000; Novus Biologicals, Littleton, CO, USA). Proteins were detected using Western Blotting Luminol Reagent (Bio‐Rad, Hercules, CA, USA).
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8

Western Blot Analysis of Myocardial Proteins

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Tissues were lysed in RIPA buffer containing a protease inhibitor cocktail (Beyotime Institute of Biotechnology, Haimen, China). Total protein isolated from the myocardium was separated by SDS-PAGE and transferred to polyvinylidene difluoride (PVDF) membranes. The membranes were blocked in Tris-buffered saline with 0.1% Tween (TBST) containing 5% nonfat dry milk for 1 h at RT and then incubated in universal antibody diluent (New Cell & Molecular Biotech, Suzhou, China) using the appropriate primary antibody overnight at 4°C. The primary antibodies used in this experiment were specific to the following antigens: iNOS (1 : 1000; ab210823; Abcam, Cambridge, UK), Arg1 (1 : 1000; ab91279; Abcam, Cambridge, UK), C/EBPα (1 : 1000; 18311-1-AP; Proteintech, Chicago, USA), PU.1 (1 : 2000; ab88082; Abcam, Cambridge, UK), SOCS1 (1 : 1000; YT4362; Immunoway, Newark, USA), CD63 (1 : 1000; ab213090; Abcam, Cambridge, UK), HSP70 (1 : 1000; ab2787; Abcam, Cambridge, UK), and TSG101 (1 : 1000; ab125011; Abcam, Cambridge, UK). The membranes were incubated with HRP-conjugated secondary antibodies after washing in 5% TBST. Finally, the protein bands were detected using a gel chemiluminescence imaging analysis system and the Immobilon Western Chemiluminescent HRP Substrate reagent (Millipore, Billerica, USA) and then were analyzed using ImageJ.
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9

Extracellular Vesicle Characterization by Immunoblotting

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EV isolation and characterization by IB was carried out as reported earlier [47 (link), 48 (link)]. Blocked membranes were probed with either rabbit monoclonal antibodies (mAbs) to TSG101 (ab125011) from Abcam (Cambridge, UK) and CD63 (55051) and FAK (13009) from Cell Signaling Technologies (Danvers, MA, USA) or mouse mAbs to human CD81 (ab23505) from Abcam, Alix (sc53540) and human CD9 (sc13118) from Santa Cruz Biotechnology, Inc. (Dallas, TX, USA), and human SERPINA1 (NBP2-52557) from Novus Biologicals (Littleton, CO, USA).
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10

EV Protein Characterization and Quantification

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The protein samples of EV from different groups were lysed using RIPA buffer (Beyotime, China). Protein concentrations were determined using BCA Protein Assay Kit (Thermo Scientific). Samples were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to nitrocellulose membranes (Immobilon P, Millipore, USA). The membranes were blocked with 5% milk in Tris-buffered saline containing 0.1% Tween-20 for 1 h at room temperature. Then, the membranes were incubated with primary antibodies at 4 °C overnight. The antibodies included anti-GM130 (Abcam, ab30637, 1:1000), anti-CD9 (Abcam, ab92726, 1:1000), anti-TSG101 (Abcam, ab125011, 1:1000). The membrane was then incubated with corresponding secondary antibodies for 1 h at room temperature. The bands were visualized using the ECL Prime Western Blotting Detection Reagent (GE, UK).
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