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Cm 3050 s

Manufactured by Thermo Fisher Scientific
Sourced in Germany

The CM 3050 S is a high-performance benchtop centrifuge designed for laboratory applications. It features a brushless motor and a microprocessor-controlled system to provide precise speed and time settings. The centrifuge can accommodate various rotor types and sample volumes to accommodate a wide range of laboratory needs.

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8 protocols using cm 3050 s

1

SIV RNA Detection in Tissues

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All tissues in O.C.T were cut at 10 µm on cryostat (LEICA CM 3050 S) and put on slides (Thermo Scientific). These slides were conserved at −20 °C. The epitope revelation protocol was realized by two methods. For detection of SIVmac RNA, we followed the RNAscope protocol with SIVmac251-gag probe utilization (Advanced Cell Diagnostics Europe) and ACD HybEZ Hybridization system (Advanced Cell Diagnostics Europe, 310013). For detection of SIVagm RNA, the SIVagm probe was made based on the SIVagm.sab92018 backbone, as described in a previous study17 (link). The primary antibodies (Supplementary Data 4; 1:200) were added overnight at 4 °C. Then we washed the slide during 1 h in PBS and added secondary antibodies (Supplementary Data 4; 1:200) and DAPI (Supplementary Data 4; 1:1000) for 1 h at 4 °C. We washed the slide during 1 h in PBS and we added mounting medium (Invitrogen, 00-4958-02). We finally dropped off the cover (Fisher Scientific, Dutscher) from the slide with mounting medium. The fluorescence staining was observed and captured by a spinning-disk on three tissue sections per monkey (Yokagawa, CellVoyager CV1000). We analyzed these images by ImageJ (Fiji).
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2

Nasal Turbinate Tissue Fixation and Embedding

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Nasal turbinates were fixed in paraformaldehyde 4% at 4°C or with methanol at −20°C (for the following antibodies: KRT7, KRT19, DEUP1, centrin 2, HES6) overnight then extensively rinsed with phosphate-buffered saline (PBS). Fixed tissues where then prepared for paraffin embedding or cryo-embedding for cryostat sectioning. For cryoprotection, tissues were soaked in a 15% sucrose solution until saturation of the tissue followed by saturation in a 30% sucrose solution. Tissue was embedded in optimal cutting temperature (OCT) medium (Thermo Fisher Scientific) at room temperature and then submerged in isopentane previously tempered at −80°C. Fully differentiated air-liquid cell cultures were embedded in paraffin using a similar protocol with a shorter time for paraformaldehyde 4% fixation (15 min at room temperature). Each Transwell was cut with a razor blade before embedding. Cutting of frozen tissues was performed with a cryostat Leica CM3050 S. Cutting of paraffin-embedded sections was performed using a rotary microtome MICROM HM 340E (Thermo Fisher Scientific).
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3

Tissue Preservation for Cryosectioning

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To conserve frozen tissues for ulterior image analyses, tissue pieces or small biopsies were incubated in PFA 4% (AlfaAesar, J61899) overnight. After several washes, the tissues were immersed into sucrose (Sigma, S0389-500G) 10% at 4°C during 72h. Then the incubation medium was changed to sucrose 20%, and after 72h to sucrose 30%. Tissues were then snap-frozen in O.C.T. (Tissue-Tek, 4583). Tissues were conserved at −80°C or in liquid nitrogen. All tissues in O.C.T were cut at 10μm using a cryostat (LEICA CM 3050S) and put on slides (Thermo Scientific, J3800AMNZ). These slides were stored at −20°C.
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4

Immunohistochemical Staining Protocol

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All tissues in O.C.T were cut at 10 µm on a cryostat (LEICA CM 3050 S) and put on slides (Thermo Scientific). These slides were conserved at −20 °C. The epitope revelation protocol was realized with PBS incubation at room temperature for 15 min. Then, we let the slide in methanol (Fisher Chemical) at −20 °C for 2 h and incubated in formaldehyde 2% at room temperature (Sigma) for 15 min. We saturated non-specific sites by BSA 4% (Sigma) during 2 h at room temperature and washed for 1 h with PBS. The primary antibodies (Supplementary Data 4; 1:200) were added overnight at 4 °C. Then we washed the slide during 1 hour in PBS and we added secondary antibodies (Supplementary Data 4; 1:200) and DAPI (Supplementary Data 4; 1:1000) for 1 h at 4 °C. We washed the slide during 1 h in PBS and we added mounting medium (Invitrogen). We finally dropped off the cover (Fisher Scientific, Dutscher) from the slide with mounting medium. The fluorescence staining was observed and captured by a spinning-disk on three tissue sections per monkey (Yokagawa, CellVoyager CV1000). We analyzed these images by ImageJ (Fiji).
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5

Flavonoid Autofluorescence in Rat Brain

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The presence of flavonoids, such as quercetin aglycone and derivates, was corroborated by their natural epifluorescence observed in brain areas after histological analysis. Rats receiving quercetin or rutin at 30 and 100 mg/kg, i.p., were euthanized and their brains were quickly dissected on dry ice and stored at −80 °C until histological analysis. Rostro–caudal coronal sections from bregma −0.60 mm to −2.92 mm [26 ] were cut at a 20 µm of thickness on a cryostat (Leica Biosystems Nussloch GmbH CM3050S, Nussloch, Germany), adhered to Superfrost/Plus slides (Fisher Scientific, Waltham, MA, USA), each 120 µm apart and stored at −80 °C until used. Thawed sections were observed with epifluorescence using a Leica DM 1000 LED fluorescence microscope with a HI PLAN 10X/0.25 or 40X/0.65 objective and bandpass filter sets of 340–380/dichromatic mirror 400/barrier LP 425 for DAPI emission (Leica Microsystems AG, Wetzlar, Germany). The images were captured using a digital FireWire camera (DFC450C, Leica Biosystems Nussloch GmbH, Nussloch, Germany) and Leica Application Suite software. Sections were exposed to DAPI blue filter sets, and the resulting images were processed in Adobe Photoshop CS6 software (Adobe Inc., San Jose, CA, USA) using an iMac computer.
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6

Postmortem Hippocampus Analysis in Substance Use Disorder

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Hippocampi were derived from postmortem brains collected at autopsy at the Cuyahoga County Medical Examiner’s Office, Cleveland, OH. Tissues were dissected and rapidly frozen in 2-methylbutane on dry ice without fixation and kept in dry ice before permanent storage at –80°C. Postmortem hippocampus samples from 20 subjects diagnosed with SUD, 24 with comorbid SUD and MDD, 20 with MDD, and 20 psychiatrically-normal control donors were obtained from the University of Mississippi Medical Center Postmortem Brain Core. Hippocampi were cut into 14 μm thick sections using a cryostat (Leica CM3050S) and mounted on Fisher Superfrost slides.
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7

Timed Mouse Embryo Collection and Preparation

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Dams were placed into male cages each night and checked every morning for a vaginal plug. The day of the vaginal plug was recorded as embryonic day 0.5. Timed-pregnant dams were euthanized, embryos were collected in 1X phosphate-buffered saline (PBS; 136.9mmol NaCl, 2.683mmol KCl, 4.290mmol Na2HP04 7H2O, 1.470mmol KH2P04), and tissue was taken for genotyping. E12.5 and E13.5 whole heads were submerged in 4% paraformaldehyde in PBS (PFA; Millipore Sigma, 818715). E15.5 and E17.5 brains were dissected, then submerged in 4% PFA. For P0 collections, newborn pups were deeply anesthetized and transcardially perfused with 1X PBS followed by 4% PFA. P0 brains were dissected and submerged in 4% PFA. All material was fixed for 24 hours in 4% PFA at 4°C before being passaged through a sucrose series (10%, 20%, 30%) for cryoprotection. Material was then embedded in Tissue Freezing Medium (VWR 15146-019), frozen, and stored at −80°C. Frozen material was sectioned at 12 μm on a Leica cryostat (CM3050S) onto superfrost plus slides (Fisher, 12-550-15), and stored at −20°C prior to staining.
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8

Timed Embryonic Tissue Collection

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Dams were placed into male cages each night and checked every morning for a vaginal plug.
The day of the vaginal plug was recorded as embryonic day 0.5. Timed-pregnant dams were euthanized, embryos were collected in 1X phosphate-buffered saline (PBS; 136.9mmol NaCl, 2.683mmol KCl, 4.290mmol Na2HP04 7H2O, 1.470mmol KH2P04), and tissue was taken for genotyping. E12.5 and E13.5 whole heads were submerged in 4% paraformaldehyde in PBS (PFA; Millipore Sigma, 818715). E15.5 and E17.5 brains were dissected, then submerged in 4% PFA. For P0 collections, newborn pups were deeply anesthetized and transcardially perfused with 1X PBS followed by 4% PFA. P0 brains were dissected and submerged in 4% PFA. All material was fixed for 24 hours in 4% PFA at 4°C before being passaged through a sucrose series (10%, 20%, 30%) for cryoprotection. Material was then embedded in Tissue
Freezing Medium (VWR 15146-019), frozen, and stored at -80°C. Frozen material was sectioned at 12 µm on a Leica cryostat (CM3050S) onto superfrost plus slides (Fisher, , and stored at -20°C prior to staining.
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