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8 protocols using anti cd4 alexa fluor 700

1

Immune Cell Profiling in Healthy PBMCs

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CD4, CD8, and CD56 positive cells in PBMCs isolated from healthy human donors were detected by flow cytometry on a fluorescence-activated cell sorter FACScan (Becton Dickinson, Walpole, MA, USA). Alexa Fluor 700 anti-CD4 (eBioscience, San Diego, CA, USA), anti-CD8-Per-CP-Cy5.5, and anti-CD56-Per-CP-Cy5.5 (BD Pharmingen, San Diego, CA, USA) antibodies were used to detect expression levels of CD4, CD8, and CD56, respectively. Approximately 1 × 10^6 pelleted PBMC cells were blocked in PBS buffer with 1% BSA for 20 min at room temperature. The cells were then stained with antibodies at 4 °C for 30 min, washed twice in PBS buffer with 1% BSA and resuspended in 0.5 ml staining buffer for FACScan analysis.
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2

Immunophenotyping of Th17 and Treg Cells

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For Th17 cell immunostaining, purified CD4+ T-cells were identified using labeled monoclonal antibodies against the following molecules: Alexa Fluor 700 anti-CD4 and PE anti-ROR-γt (AFKJS-9 clone, eBioscience, San Diego, CA, USA).
For Treg immunostaining, purified CD4+ T-cells were identified using labeled monoclonal antibodies against the following molecules: Alexa Fluor 700 anti-CD4 (RPA-T4 clone, BD Pharmingen), PE-Cy5 anti-CD25 (M-A251 clone, BD Pharmingen), Alexa Fluor 647 anti-CD127 (HCD127 clone, BioLegend), and Alexa Fluor 488 anti-FOXP3 (150D clone, BioLegend).
To analyze CTLA-4 expression in Treg cells, PE anti-CTLA-4 antibody (BNI3 clone, BD Pharmingen) was added. The integrated mean fluorescence intensity (iMFI) was calculated by multiplying the percentage of CTLA-4 by their corresponding mean fluorescence intensity (MFI), as described previously [26 (link)].
Intracellular staining for FOXP3 and ROR-γt CD4+ T-cells was performed using a commercially available kit (BioLegend) following the manufacturer's instructions. Appropriate isotype controls were used to allow identification of positive and negative cell populations. To rule out nonspecific antibody binding and autofluorescence, quadrants were set according to isotype controls. Positive and negative gates for each molecule were also verified on the basis of “fluorescence-minus-one” controls.
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3

Multiparameter Analysis of Colon Immune Cells

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Single cell suspension of colon cells were isolated as previously described [41 (link), 42 (link)] and analyzed by flow cytometry. Cells were stained with the following antibody panels: panel 1) CD45, CD11b, CD11c, F4/80, MHC II, Ly-6C, and Ly-6G; panel 2) CD45, CD11b, CD3, CD4, CD8, CD19, and MHC II. Flow cytometry was performed with the FACS LSR Fortessa (BD Biosciences) and data were analyzed using DIVA software (BD Biosciences). The following antibodies were used: anti-F4/80 BV421 (cat. 565,411), anti-Ly-6C Alexa Fluor 700 (cat. 561,237), anti-CD11c PE (cat. 561,044), anti-MHC II BV650 (cat. 563,415), anti-CD3 BV510 (cat. 563,024) from BD Bioscences (Milano, Italy); anti-CD11b PerCP-Cy5.5 (cat. 45–0112), anti-CD4 Alexa Fluor 700 (cat. 56–0041), anti-Ly-6G FITC (cat. 11–5931), anti-CD45 Pe-Cy5 (cat. 15–0451), anti-CD8 PE (cat. 12–0083), anti-CD19 FITC (cat. 11–0193) from EBiosciences (San Diego, CA, USA).
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4

Multi-parameter Flow Cytometry Analysis

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Flow cytometric analysis was performed using an LSR II flow cytometer (BD). Cell phenotypes were analyzed using combinations of anti-GITR-PE or -efluor450, anti-PD-1-PE, anti-FoxP3-PE, -efluor450 or -APC, anti-CD8-PE, anti-C45.1 PECy7, anti-Helios-FITC, anti-Eos-PE, anti-CD103-APC, anti-CD4-AlexaFluor700 (all from eBioscience), and anti-Neuropilin-1-PE or -APC, anti-CD103-PerCPCy5.5 (Biolegend) antibodies. Fixable viability dye efluor780 (eBioscience) was used in all experiments to exclude dead cells. Cell proliferation dye (CPD)-efluor450 and CFSE (both from eBioscience) were used to monitor cell proliferation. Anti-Ki67-PE (eBioscience) was used to identify dividing cells. Results were analyzed using FlowJo analysis software (Tree Star, Inc.).
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5

Phenotypic Characterization of NY-ESO-1 T Cells

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To exclude dead cells, the Near-IR Dead Cell Stain Kit (Thermo Fisher Scientific) was used. NY-ESO-1-specific TCR expression was evaluated using the PE-conjugated A0201 NY-ESO-1-tetramer (kindly provided by Hiroshi Shiku, Mie University, Tsu, Japan). The following fluorochrome-conjugated antibodies were used for immunophenotyping of different surface markers on SW982 cells as well as NY-ESO-1-specific T cells: anti-CD80-APC (BioLegend, San Diego, CA, USA), anti-HLA-ABC-FITC (eBioscience, San Diego, CA, USA), anti-programmed cell death protein ligand 1 (PD-L1)-PE (eBioscience), anti-CD3-V500 (AmCyan) (BD Biosciences, San Diego, CA, USA), anti-CD8-Parcific blue (BioLegend), anti-CD25-PE-Cy7 (BioLegend), anti-CD4-Alexa Fluor 700 (eBioscience). Data acquisition was performed on an LSR II device (BD Biosciences) and data were analyzed using the FlowJo software (TreeStar, Ashland, OR, USA).
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6

Multiparameter Surface Marker Profiling

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The following antibodies were used for surface marker staining: Anti-human goat F(ab) IgG (H+L) PE antibody (cat. no. 109-116-088) from Dianova; anti-CD3-PE eFluor 610 (cat. no. 61-0038-42), and anti-CD4-Alexa Fluor 700 (cat. no. 560049-42) from eBioscience, San Diego; anti-CD8-PerCP (cat. no. 344708), anti-CD10-APC (cat. no. 312210), anti-human CD223-APC (LAG-3, Cat. 369212), anti-PD-1-Alexa Fluor 488 (cat. no. 329935), anti-human CD366 (Tim-3, Cat. 345007) all from Biolegend; anti-CD3-V500 (cat. no. 561416) from BD Biosciences.
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7

Multiparametric Flow Cytometry Analysis of NY-ESO-1-specific T Cells

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Cells were evaluated by multiparametric flow cytometry. Near-IR Dead Cell Stain Kit (Thermo Fisher Scientific) was used to exclude dead cells. HLA-peptide monomers were kindly provided by Prof. H. Shiku (Mie University, Tsu, Japan). PE-conjugated HLA NY-ESO-1-tetramer were produced according to the protocol of the NIH Tetramer Core Facility (Emory University, Atlanta, GA, USA) and were used to detect NY-ESO-1-specific TCR expression. The following fluorochrome-conjugated antibodies were used for immunophenotyping of following surface markers: anti-CD3-V510 (AmCyan), anti-CD8-PerCP, anti-CD45RA-APC, anti- programmed cell death protein 1 (PD-1)-Alexa Fluor 488, anti-T cell immunoglobulin mucin-3 (TIM-3)-Brilliant Violet 421 and anti-CXCR3-Alexa Fluor 488 (all from Biolegend, San Diego, CA, USA), anti-CD4-Alexa Fluor 700, anti-CCR7-PE-Cy7, anti-CD62L-eFluor 450 and anti-CD3-eFlour 610 (all from eBioscience, San Diego, CA, USA). Data were acquired on an LSR II device (BD Biosciences) and analyzed using FlowJo software (TreeStar, Ashland, OR, USA). The gating strategies are illustrated in Supplementary Figure S2.
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8

CD154 Enrichment of Activated T-Cells

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Stimulated PBMC were collected and labeled with anti-CD154 phycoerythrin (PE) (MiltenyiBiotec, Auburn, CA, USA). Subsequently cells were washed and incubated with anti-PE MicroBeads (MiltenyiBiotec, Auburn, CA, USA). Labeled and washed cells were applied to an MS Column (MiltenyiBiotec, Auburn, CA, USA) to enrich for CD154 positive T cells. Samples collected prior cell sort, CD154-enriched population and flow through were additionally stained for anti-CD3 Pacific Blue (PB) (Biolegend), anti-CD4-Alexa Fluor 700 (eBioscience), anti-CD8 HorizonV500 (BD Biosciences) (Figure S1). MACS buffer (PBS supplemented with 2mM EDTA and 2% FCS) was used during cell sorting procedure.
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