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8 protocols using na2co3

1

Synthesis of Ta3N5 from Ta2O5 and Na2CO3

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Ta2O5 (99.99%, Shanghai Adamas Reagent Co., Ltd.) was well mixed with 0.5 mmol of Na2CO3 (99.5%, Wako Pure Chemical Industries, Ltd.) via mechanical grinding in an agate mortar for 0.5 h. The mixture was then heated to 900 °C for 15 h at a ramp rate of 10 °C min−1 under an ammonia stream (flow rate: 120 sccm). The nitridation duration of 15 h was determined by the complete transition of the intermediate phase, NaTaO3 to Ta3N5. After being allowed to cool to room temperature naturally, the sample was rinsed with water at 65 °C and dried under vacuum at 40 °C for 5 h.
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2

Quantifying Polyphenols in Vegetable Extracts

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The total polyphenol content of
vegetable methanol extracts was determined by the Folin–Denis
method with minor modifications (Folin et al., 1912). Briefly, a Folin
& Ciocalteu’s phenol reagent (20 μL) (Wako Pure Chemical
Industries, Ltd., Osaka, Japan), an aqueous solution of 10% Na2CO3 (40 μL) (Wako Pure Chemical Industries,
Ltd., Osaka, Japan), and distilled water (120 μL) were added
to 20 μL of the methanol extract and the mixture was incubated
at room temperature for 1 h under dark conditions. The absorbance
was measured at 750 nm with a spectrophotometer. An aqueous solution
of gallic acid was used as a standard.
Polyphenols in the hosoba-wadan
and nishi-yomogi methanol extracts were determined by HPLC using a
Mightysil RP-18 GP II (5 μm) column (4.6 × 250 mm2; Kanto Chemical Co., Inc., Japan) at a flow rate of 1.0 mL/min.
The sample was injected, and elution was performed with a system composed
of solvent A (0.1% phosphoric acid (Wako Pure Chemical Industries,
Ltd., Osaka, Japan) in water) and solvent B (0.1% phosphoric acid
in acetonitrile/methanol solution mixed at the same volume). The elution
was detected by a UV–vis detector at 280 nm. Compounds corresponding
to each peak were identified by comparison with the retention time
of reference standards and our previous report.8 (link)
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3

Synthesis and Chloride Exchange of Mg/Al LDHs

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Reagent-grade Mg(NO3)2·6H2O, Al(NO3)3·9H2O, Na2CO3, NaOH, HCl, and NaCl (Wako Pure Chemical Industries, Ltd.) were used. Highly and weakly charged Mg/Al LDHs with x = 0.28 and 0.22, respectively, were synthesised by the conventional co-precipitation method using an aqueous solution containing Mg2+ and Al3+ ions as a precursor solution and NaOH/Na2CO3 aqueous solution as a precipitation agent, followed by hydrothermal treatment at 140 °C for 22 h24 –26 . After drying at 60 °C in air, the samples were subjected to the Cl-exchange treatment method using an acidic chloride aqueous solution to eliminate carbonate contamination (immersed overnight in aqueous HCl (33.0 mM) and NaCl (4.0 M) solutions at room temperature).
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4

DNA Conformation and Interactions

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T4 G7 DNA (ca. 166 kbp, ca. 60 μm contour
length) was purchased from Nippon Gene Co. Ltd. (Japan). Salmon sperm
DNA (ca. 300 bp) was purchased from Wako Pure Chemical Industries,
Ltd. (Japan). The concentration of DNA is given in phosphate groups.
Fluorescent dye YOYO-1 (1,1′-(4,4,7,7-tetramethyl-4,7-diazaundeca-methylene)-bis-4-[3-methyl-2,3-dihydro-(benzo-1,3-oxazole)-2-methylidene]-quinolinium
tetraiodide) was provided by Molecular Probes (Invitrogen, Japan).
NaCl, CaCl2·2H2O, and Na2CO3 were purchased from Wako Pure Chemical Industries, Ltd. (Japan).
Spermine tetrachloride, disodium dihydrogen ethylendiaminetetraacetate
dihydrate (EDTA), and ethanol were purchased from Nacalai Tesque Inc.
(Japan). Sodium polystyrene sulfonate (PSSNa, Mw ∼15 000) and poly(diallyldimethylammonium chloride)
(PAH, Mw ∼75 000) were purchased
from Aldrich. Milli-Q water purified by Simplicity UV apparatus (Millipore,
Japan) was used in all experiments.
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5

Structural Relaxation of Hemicellulose for Delignification

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Cellulose, monosaccharides
(glucose, xylose, arabinose, galactose, mannose), lower organic acids,
NaOH, and Na2CO3 were purchased from Wako Pure
Chemical Industries. A type of xylan, derived from beech wood, was
purchased from SERVA Electrophoresis. Ultrapurified water with an
electrical resistance of over 18.2 MΩ was prepared with a Milli-Q
water purification system (Merck, MPGP02001). Japanese cedar in the
form of particles sized 0.85–2 mm was used as the starting
material. It was subjected to a steam pretreatment at 220 °C
under atmospheric pressure. This pretreatment was performed to cause
structural relaxation of hemiCellulose and thereby promote the delignification.33 (link) The procedure of the pretreatment is described
in detail in the Supporting Information. The compositions of the original and pretreated cedars are listed
in Table 3.
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6

Allelopathic Potential of Chinese Medicinal Plants

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In the study, 55 Chinese pharmaceutical plants were collected by the Institute of Xinjiang Environmental Protection and Yunnan Medicinal Botanical Garden for the evaluation of their biological activities. After lyophilization at −20 °C for 24 h, plant materials were crushed into powder by a grinder and filtered with a 100-hole sieve. Seeds of Lactuca sativa were adopted as receptor plants and purchased from Takii Seed corporation (Takii Seed corporation, Japan, Kyoto) for the evaluation of allelopathic effects of the collected plant samples. As the standards, synthetic chemicals of gallic acid, Na2CO3, Trolox (6-hydroxy-2,3,7,8-tetramethylchroman-2-carboxylic acid), AAPH (2,2-azobisdihydrochloride), K2HPO4, DPPH (1,1-diphenyl-2-picrylhydrazyl), fluorescein and Folin–Ciocalteu’s phenol reagent were obtained through Industries of Wako Pure Chemical (Wako Pure Chemical, Japan, Osaka).
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7

Comprehensive Protein Profiling Protocol

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Sucrose, Tris(hydroxymethyl)aminomethane (Tris), NaCl, CaCl2, Dulbecco's modified Eagle's medium, urea, Na2CO3, sodium deoxycholate (SDC), iodoacetamide, ethyl acetate, acetonitrile (ACN), distilled water, methanol, TFA, ammonia solution, formic acid (FA), triethylammonium bicarbonate (1 M, pH 8), and other chemicals were purchased from FUJIFILM Wako. EDTA was purchased from Nacalai Tesque. Fetal bovine serum and penicillin–streptomycin were purchased from Life Technologies. Protein digestion standard mixture (MassPREP: yeast alcohol dehydrogenase, rabbit glycogen phosphorylase b, bovine serum albumin, and yeast enolase I) was purchased from Waters. Protease inhibitor cocktails and trypsin were purchased from Roche. Tris(2-carboxyethyl) phosphine hydrochloride was purchased from Thermo Fisher Scientific. Styrene-divinylbenzene crosslinked (SDB-XC) and octadecyl (C18) Empore disks were purchased from 3M. Protein LoBind tubes (1.5 ml) were purchased from Eppendorf. Dissolution buffer consists of 6 M urea, 0.1 M Na2CO3, and 0.5% w/v SDC.
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8

Fluorescence Spectroscopy of ANS-CTAB Complex

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Reagents and chemicals 1-Anilino-8-naphtalene sulfonate (ANS, ICN Biochemical Inc., USA), as a fluorescent probe, was used without further purification. Hexadecyltrimethylammonium bromide (cetyltrimethylammonium bromide, CTAB), NaH2PO4 KH2PO4, Na2B4O7, and Na2CO3 were used as received from Wako Pure Chemical Industries, Japan. Tetrahydrofuran (THF) (95%) was purchased from Wako Pure Chemical Industries, Japan. All of the aqueous solutions were prepared with water purified by a Milli-QII system (Millipore, USA).
The ANS (0.75 × 10 -3 mol dm -3 ) and CTAB (3.29 × 10 -4 mol dm -3 ) stock solutions were prepared by dissolving them in water. The pH values of the aqueous solutions were adjusted with NaH2PO4/H3PO4 (pH 3.0), KH2PO4/Na2B4O7 (pH 7.0), or Na2B4O7/Na2CO3 (pH 11.0) buffers. Moreover, the ionic strength of all the aqueous solutions was adjusted to 0.1 mol dm -3 by adding sodium chloride.
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