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Autofluorescence quenching kit

Manufactured by Vector Laboratories
Sourced in United States

The Autofluorescence Quenching Kit is a laboratory product offered by Vector Laboratories. It is designed to reduce or eliminate autofluorescence in samples, which can interfere with fluorescence-based analyses. The kit provides reagents and protocols to effectively quench autofluorescence, enabling more accurate and sensitive detection of target fluorophores.

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5 protocols using autofluorescence quenching kit

1

Co-localization of Immune Markers

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The section slides were deparaffinized in neo-clear and rehydrated in serial ethanol, followed by antigen retrieval with proteinase K (Abcam, ab64220) at RT for 30 min and blocking with BLOXALL (Vector, SP-6000) for 1 h. To observe co-localization of CD4, IL-17A, and TNF-α, the slides were incubated with primary mouse antibody for TNF-α (1:100, Santa, sc-52746), rabbit antibody for IL-17A (1:50; Abcam, ab79056), and rat antibody for CD4 (1:50; Santa, sc-19641) at RT for 1 h, followed by incubation with 488-conjugated anti-mouse antibody (1:100; Invitrogen, A11001), Cy3-Alexa-conjugated anti-rabbit antibody (1:100; Jackson ImmunoResearch, 111–165-144), and Cy5-conjugated anti-rat antibody (1:100; Jackson ImmunoResearch, 712–175-153) at RT for 1 h. To avoid nonspecific staining, the stained slides were treated with DAPI using the Autofluorescence Quenching Kit (Vector, SP-8500). Immunofluorescent images were collected by a confocal microscope (Leica Microsystem, Germany).
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2

Quantifying Glycosylation in PAH Biopsies

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Endomyocardial biopsy samples were collected from PAH patients as previously described [47 (link)], and all patients signed a consent form to be in the study. Deparaffinized and rehydrated sections were incubated with fluorescein labeled succinylated wheat germ agglutinin (Vector Laboratories, Burlingame, CA, USA) (1:50) and Alexa 633-WGA overnight at 4 °C, washed in PBS twice, treated with autofluorescence quenching kit (Vector Laboratories), and mounted in Antifade media containing DAPI (Vector Laboratories). Confocal images were collected using a Bio-Rad (Hercules, CA, USA) MRC 1000 scan head mounted on an upright Nikon Optishot (Tokyo, Japan) microscope at the University of Minnesota Imaging Center. FIJI (National Institutes of Health, Bethesda, MD, USA) was used to quantify total intracellular succinylated WGA signal normalized to area.
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3

Ferroptosis-related Exosome Analysis

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EMEM (Wako, 051–07615), FBS (Biowest, S1810-500; Nuaillé, France), exosome-depleted FBS (Exo-FBS™, Gibco, A27208-03), erastin (Selleck Chemicals, S7242), RSL3 (MedChemExpress, HY-100218A), ferric ammonium citrate (FAC; Sigma Aldrich, F5879), RhoNox-4 (Goryo Chemical; FerroOrange, GC904-01), ExoSparkler Exosome Membrane Labeling kit-Deep Red (Dojindo, EX03), phorbol 12-myristate 13-acetate (PMA; Wako, 162–23591), polyethylene glycol 6000 (Wako, 167–22941), Autofluorescence Quenching Kit (Vector, SP-8400), Aurum™ Total RNA Mini Kit (BioRad, 64337836), NEBNext Ultra II Directional RNA Library prep kit for Illumina (BioLabs, E7760S), NEBNext Multiplex Oligos for Illumina (BioLabs, E6440S), desferal (DFO, Novartis), anti-CD63 (Thermo Fischer Scientific, #10628D), anti-mesothelin (IBL, #28127), anti-αSMA (Abcam, ab5694), anti-CD68 (CST, 97778S), anti-GFP (MBL life science, #598), anti-TfR1 (Thermo Fischer Scientific, #13–6800), anti-FtL (abcam, ab69090), anti-FtH (SantaCruz, sc-H53), anti-IRP1 (CST, #20272), anti-IRP2 (Novus, NB100-1798), Cell Cycle Regulation Antibody Sampler Kit (CST, #9932), anti-mouse IgG Alexa488 (Thermo Fischer Scientific, A11108) and anti-rabbit IgG Alexa 568 (Thermo Fischer Scientific, A-11011) were used.
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4

Immunostaining of Formalin-Fixed Cardiac Tissue

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RV specimens fixed with 10% formalin were frozen in melting isopentane. 10 μm cryosections were treated with antigen retrieval buffer (10 mM Tris, 1 mM EDTA, 0.05% Tween 20, pH 9.0) and incubated at 95°C for 5 min. Samples were then permeabilized with 1% Triton X-100 in PBS for 5 min. Sections were washed/blocked with 5% goat serum in PBS and then incubated with primary antibody for 48 h at 4°C. The tissues were then washed/blocked with 5% goat serum and incubated with secondary antibody at 37°C for 30 min. For RV cardiomyocyte imaging, formalin fixed RV specimens were manually dissected to isolate fiber bundles. Antigen retrieval was performed by incubating samples in antigen retrieval buffer at 95°C for 45 min. Fibers were then permeabilized with 1% Triton X-100 in PBS for 5 min. Cells were then treated with primary antibodies as described above. All samples were embedded in Vectashield containing DAPI (Vector Laboratories, Burlingame, CA). RV cardiomyocytes stained for GLO1 were treated with autofluorescence quenching kit (Vector Laboratories) to reduce mitochondrial autofluorescence. Z-stacks of RV sections and cardiomyocyte bundles were obtained with an Olympus FV1000 BX2 upright confocal microscope (Tokyo, Japan) at the University of Minnesota Imaging Center. All images used to compare fluorescence intensity between groups were collected under identical settings.
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5

Immunohistochemical Analysis of Pancreatic Proteins

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The pancreas tissues after fixation with 4% paraformaldehyde for 2 weeks were embedded in paraffin, and 5μm sections were stained by hematoxylin-eosin. For the immunofluorescence histochemistry, the cryoprotected pancreas tissues embedded in the OCT medium (Sakura Finetek, Japan) were cut by cryotome (Tissue-Tek® Polar®, Sakura, Japan), and 5μm sections were immersed with heated 0.01% Citrate retrieval buffer to induce epitope retrieval. Non-specific staining was blocked with 1% bovine serum albumin (Nacalai tesque, Japan), and were incubated overnight at 4°C with the primary antibodies at the dilution of 1:100. We used mouse monoclonal anti-human Hsp70 (BD Bioscience, USA), rabbit anti-human activated μ-calpain (order made by PEPTIDE Institute, Japan), rabbit anti-human cathepsin B (Cell Signaling, USA), and mouse monoclonal anti-Lamp2 (Abcam, USA) antibodies. After washings, the sections were incubated for 30 min with secondary antibodies; Alexa FluorTM 594 goat anti-mouse IgG [H+L] (Invitrogen, USA), or Alexa FluorTM 488 goat anti-rabbit IgG (Invitrogen, USA) at the dilution of 1:500. To block autofluorescent staining, Autofluorescence Quenching Kit (Vector Laboratories, USA) was utilized. The immunoreactivity was observed with the laser confocal microscope (LSM5 PASCAL, Software ZEN 2009, Carls Zeiss, Germany).
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