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8 protocols using 4 nitrophenyl β d glucuronide

1

Fecal β-Glucuronidase Activity Assay

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Activity of β-glucuronidase in the rats' feces was measured using the method described by Shiau and Chang [30 (link)]. Briefly, fresh fecal pellets were collected in the morning before and after irinotecan administration (day 4 and day 7), then weighed, and mixed with PBS (0.01 M, pH 7.5) at a wt/wt ratio of 1 : 100. After softening for 20 min, the fecal pellets were homogenized. Then 0.05 mL 4-nitrophenyl β-D-glucuronide (0.01 M, Sigma, USA) was added to 1 mL diluted fecal homogenate to produce the following reaction:

4-nitrophenyl β-D-glucuronide + β-glucuronidase → 4-nitrophenol + β-glucuronide

All reaction solutions were incubated at 37°C for 60 min and then centrifuged at 3000g for 10 min. The absorbance of each supernatant solution was measured at 405 nm in a spectrophotometer (Multiskan Spectrum GO, Thermo Fisher Scientific, USA). The concentration of 4-nitrophenol in each sample was calculated by reference to a standard curve. One unit of fecal β-glucuronidase was defined as the amount of enzyme that will cleave 1 nmol 4-nitrophenol per hour at 37°C under saturated substrate concentrations.
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2

Measuring Gut Bacterial Enzyme Activity

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Serum unconjugated 17β‐estradiol (E2) was assessed using an ELISA kit (Biovision; Milpitas, CA) following the manufacturer's instructions.
Bacterial β‐glucuronidase activity in cecal content was assessed with slight modifications to previous protocols (Flores et al., 2012 (link); Walsh et al., 2020 (link)). Briefly, approximately 300 mg of frozen cecal content was homogenized in 1 mL ice‐cold PBS. Lysates were centrifuged at 2000 rpm for 5 min at 4°C and the supernatant was further centrifuged at 10,000 rpm for 20 min. Enzyme activity was assessed in the supernatant by mixing 25 μL of supernatant, 50 μL PBS, and 50 μL 4‐nitrophenyl‐β‐d‐glucuronide (1 mM, dissolved in PBS; Sigma‐Aldrich, St. Louis, MO # 10344‐94‐2). The resulting mixture was incubated at 37°C for 15 min, followed by the addition of 125 μL sodium hydroxide (NaOH, 0.5 N, ThermoFisher #BP359) to stop the reaction. The absorbance was read at 405 nm on a Biotek HTX microplate reader. Enzymatic concentrations were extrapolated from a standard curve of a serially diluted pure enzyme purchased from Sigma‐Aldrich (# G7646). Enzyme activities were normalized by the total protein content in each sample.
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3

Colorimetric Exoglycosidase Activity Assay

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The activity of lysosomal exoglycosidases (N-acetyl-β-hexosaminidase (HEX, E.C. 3.2.1.52) and β-glucuronidase (GLU, E.C. 3.2.1.31)) was measured colorimetrically by the method of Marciniak et al. (HEX) [34 (link)] and Chojnowska et al. (GLU) [35 (link)]. 4-Nitrophenyl-N-acetyl-β-glucosamide and 4-nitrophenyl-β-D-glucuronide (Sigma, St. Louis, MO, USA) was used to evaluate HEX/GLU activity, respectively. The absorbance of released 4-nitrophenol was measured at 405 nm.
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4

Analytical Techniques for Bacterial Metabolites

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Gastrodin (>98%) was purchased from Tokyo Chemical Industry. 4-HBA (≥98%), erythromycin, oxytetracycline hydrochloride, cefadroxil, 4-nitrophenyl β-d-glucuronide, 4-nitrophenyl sulfate, and 4-nitrophenyl β-d-glucopyranoside were purchased from Sigma-Aldrich. The anaerobe gas-generating system was purchased from Becton, Dickinson and Company. HPLC-grade methanol was purchased from J. T. Bakers (Central Valley, PA, USA). All other chemicals used were of reagent grades and were used as received.
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5

Enzymatic Synthesis of Glycopeptide Conjugates

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Leucine aminopeptidase (EC 3.4.1.2) microsomal from porcine kidney (LAP), β-glucuronidase (EC 3.2.1.31) from helix pomatia type H-2 (GLU), N-(tert-Butoxycarbonyl)glycine, glycine, triglycine, σ-pinene, triphosgene, triethylamine, N-carboxyanhydride (NCA), 2-aminoethyl methacrylate hydrochloride (2-AMEA), allylamine, 4-nitrophenyl- β-D-glucuronide (PNPG), hydroxybenzotriazole (HOBt), N,N’-diisopropylcarboiimide (DIC), acrylic acid N-hydroxysuccinimide (Ac–NHS ester), deuterium oxide (D2O), dimethylsulfoxide-d6 (DMSO-d), chloroform-d (CDCl3), 2,2-dihydroxyindane-1,3-dione (Ninhydrin) and tris(hydroxymethyl)aminomethane hydrochloride (Tris–HCl) was purchased from Sigma Aldrich (St. Louis, MO, USA). GGRSK was custom-synthesized from Lifetein (Somerset, NJ, USA) and Cosmogenetech (Seoul, South Korea). Urokinase (EC 3.4.4.21)-type plasminogen activator (uPA) was purchased from Fortunachem (Wuhan, China). Acrylic acid (AAc), sodium hydroxide (NaOH), ethyl acetate anhydrous (EA), dimethylformamide (DMF), tetrahydrofuran (THF), chloroform (CCl4), methanol (MeOH), n-butanol (BuOH), acetic acid, acetonitrile, and trifluoroacetic acid were purchased from Daejung (South Korea). 2-hydroxy-2-methlypropiophenone (Darocur 1173) and dimethylsulfoxide anhydrous (DMSO) were purchased from TCI (Tokyo, Japan).
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6

Benzo[a]pyrene Exposure Protocol

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Benzo[a]pyrene (BaP, Seoul, South Korea, 98% pure), gallic acid, methanol (HPLC-grade), N-methyl-N-(trimethylsilyl)-trifluoroacetamide (MSTFA), and 4-Nitrophenyl β-D-glucuronide (PNPG) were obtained from Sigma-Aldrich (St. Louis, MO, USA). Folin–Ciocâlteu phenol reagent was obtained from Merck (Darmstadt, Germany), and peanut oil was obtained from Sekem company (Belbeis, Egypt). BaP was handled in accordance with NIH safety guidelines [133 ] and dissolved in peanut oil. Fresh solutions were prepared weekly and were stored at room temperature in the dark.
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7

Colorimetric Enzyme Assays for Fecal Microbiome

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The fixed colon tissue was stained with methylene blue (0.2%) in saline for 2–3 min. Samples were morphologically examined under an optical microscope (Olympus, Optical Co. Ltd., Tokyo, Japan) at 40 × magnification, and ACF were counted.
Faecal pre-treatment: fresh faecal samples were fully suspended in 0.1 M potassium phosphate buffer (pH 7.0), pre-cooled by a homogenizer, and then homogenized. The supernatant was obtained by ultrasound at 4°C for 10 s (six times in total) and centrifugation at 2,000 g for 15 min (18 (link)).
β-glucuronidase assay: (18 (link), 19 (link)) β-glucuronidase activity in rat faeces was determined according to the consumption of 4-nitrophenyl-β-D-glucuronide (Sigma-Aldrich, St Louis, MO, USA) in the reaction system. The 1 ml reaction system contained 0.02 M potassium phosphate buffer (pH 7.0), 0.1 mm EDTA, 2 mm 4-nitrophenyl-β-d-glucosidic acid solution and 100 μl faecal supernatant; incubation was performed for 30 min at 37°C. Then, 0.2 M NaOH solution was added to stop the reaction, and the release of 4-nitrophenol was measured at 405 nm.
β-glucosidase assay: (18 (link), 19 (link)) the procedure and reaction system for the β-glucosidase assay were the same as described above for the β-glucuronidase assay. The reaction substrate was 4-nitrophenyl-β-D-glucopyranoside (Bailingwei Technology Co., Ltd., Beijing, China).
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8

Quantitative Analysis of Antidiabetic Compounds

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Voglibose (>98.0%) was purchased from Tokyo Chemical Industries (Tokyo, Japan). Erythromycin, oxytetracycline hydrochloride, cefadroxil, 4-nitrophenyl β-D-glucopyranoside, 4-nitrophenyl β-D-glucuronide, 4-nitrophenyl sulfate, soluble starch, ammonium acetate, streptozotocin, and telmisartan, the internal standard (IS), were purchased from Sigma-Aldrich (St. Louis, MO, USA). High-performance liquid chromatography (HPLC)-grade acetonitrile was purchased from J. T. Bakers (Central Valley, PA, USA). An anaerobe gas generating system was purchased from Becton, Dickinson and Company (Sparks, MD, USA). A blood glucose monitoring system was purchased from Bayer Contour TS (Mishawaka, IN, USA). Potassium phosphate monobasic and potassium phosphate dibasic were purchased from Duksan (Seoul, Korea). All other chemicals were of analytical grades and used as received.
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