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5 protocols using micafungin

1

Quantitative Analysis of Bile Acids

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All reagents utilized were of analytical grade. Reference standards of GCDCA-S and CDCA-24G and their respective internal standards (IS) [2H5]-GCDCAS (GCDCA-S-d5, isotopic purity: 99.9%) and [2H5]-CDCA24G (CDCA-24G-d5, isotopic purity: 96.8%) were purchased from Toronto Research Chemicals (North York, ON, Canada). Ammonium acetate (Bioultra grade for molecular biology) was purchased from Sigma Aldrich (St. Louis, MO, USA). Methanol (Optima, LC/MS grade) was purchased from Fisher Scientific (Fair Lawn, NJ, USA) and used as mobile phase and dissolving solvent. Rifampin and micafungin were obtained from MedChemExpress (Monmouth Junction, NJ, USA).
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Antifungal Susceptibility Testing Protocol

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Antifungal susceptibility testing was performed according to the standardized M27-A method approved by the National Committee for Clinical Laboratory Standards (NCCLS) and previously reported methods (Nakai et al., 2003 (link)). Caspofungin (CAS), micafungin (MCFG), amphotericin B (AMB), fluconazole (FLC), itraconazole (ITC), and vorconazole (VOC) were purchased from Med Chem Express (New Jersey, NJ, United States). Stock solutions were made with sterile distilled water (MCFG and AMB) or 100% dimethyl sulfoxide (CAS, FLC, ITC and VOC). The stock solutions were diluted in RPMI 1640 medium prepared according to the Clinical and Laboratory Standards Institute (CLSI) standards and then further serially diluted twofold. The final concentration ranges of the antifungals were 0.0625 to 32 μg/ml (CAS and MCFG), 0.0156 to 8 μg/ml (AMB), 0.125 to 64 μg/ml (FLC), and 0.0013 to 1 μg/ml (ITC and VOC). Wild-type and ΔcnaA mutant strains were incubated in the presence or absence of drug for 48 h at 25°C and 37°C, and all experiments were performed in triplicate. Candida parapsilosis ATCC22019 served as a control.
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In Vitro Evaluation of Venetoclax Interactions

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Venetoclax, rifampin, ritonavir, cobicistat, ketoconazole, fluconazole, itraconazole voriconazole, posaconazole, isavuconazole, micafungin, caspofungin, and anidulafungin were purchased from MedChemExpress (Monmouth Junction, NJ, USA). The major itraconazole metabolites, hydroxy-itraconazole and keto-itraconazole were kindly provided by Dr. Nina Isoherranen (University of Washington, Seattle, WA, USA). [3H]Estradiol-17β-D-glucuronide (EβG; specific activity, 50.1 Ci/mmol), a positive control substrate for OATP1B, was purchased from American Radiolabeled Chemicals (Saint Louis, MO, USA). [3H]Venetoclax (specific activity, 29.3 Ci/mmol) was obtained from ViTrax (Placentia, CA, USA). PEG400 was purchased from Sigma-Aldrich (Burlington, MA, USA). Dimethyl sulfoxide (DMSO), LC-MS-grade formic acid, methanol, and acetonitrile were purchased from Fisher Scientific (Fair Lawn, NJ, USA), and 8-acetoxy-trisulfopyrene was obtained from Carbosynth Limited (Compton, Berkshire, UK). Human recombinant CYP3A4 Supersomes (456207) was purchased from Corning (Glendale, AZ, USA). NADPH RapidStart Regenerating System was purchased from SEKISUI XenoTech (Kansas City, KS, USA).
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Caspofungin-Adapted Candida albicans Mutants

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C. albicans caspofungin-adapted mutants used in this study are listed in Table S1 (also see Table 1). Chromosomal condition of these mutants was examined by pulse-field gel electrophoresis. DNA-seq confirmed the chromosomal condition of SMC60-2-5 and JMC160-2-5 [13 (link)].
Cells were stored in 25% vol/vol glycerol solution at −80 °C to interrupt cellular metabolism and, thus, prevent induction of genetic instability [15 (link)].
YPD medium was prepared with 1% yeast extract, 2% peptone, 2% dextrose. To prepare solid medium, 2% (w/v) agar was added. Caspofungin (Merck Sharp and Dohme Corp., Kenilworth, NJ, USA); anidulafungin (Pfizer Inc., New York, NY, USA); or micafungin (MedChem Express LLC, Monmouth Junction, NJ, USA) were handled according to manufacture recommendations and added when needed.
Primers used in this study are listed in Figure S1.
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5

Antifungal Susceptibility Testing by Broth Microdilution

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Antifungal susceptibility tests were performed by broth microdilution method as described in the CLSI M27-Ed4 document.28 A series of conidial suspensions (two times of the final inoculums) in RPMI 1640 medium were obtained ranging from 0.5×105 to 2.5×105 CFU/mL. C. parapsilosis (ATCC 22019) was used in parallel as a quality control. Amphotericin B, micafungin, voriconazole, itraconazole and terbinafine (MedChemExpress company, America) were provided as clinical formulations. The drugs were serially diluted at two-fold in a 96-well plate with the same medium. The ranges of concentrations of these drugs were 0.0313~16 μg/mL for Amphotericin B, 0.015~8 μg/mL for micafungin, 0.0313~16 μg/mL for voriconazole, 0.0313~16 μg/mL for itraconazole and 0.001~0.5 μg/mL for terbinafine. Antifungal drug dilutions were filled into columns 1 through 10 of each 96-well culture plate, column 11 as positive control without drug and column 12 serves as a negative control. The plates were stored at −80 °C and thawed on the day of the experiment.
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