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129 protocols using c fos

1

Immunoprecipitation and Immunoblot Analysis

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Lysates were prepared using RIPA buffer (Sigma) containing protease inhibitor (Roche). The protein concentration of the cell lysates was determined by bicinchoninic acid assay (BCA, Pierce, Rockford, IL), stored at –20°C. 200 µg of total protein were immune precipitated by µMACS™ Protein A/G MicroBeads MultiMACS™ Protein A/G Kit (Miltenyi Biotec, Bergisch Gladbach, Germany) and performed according to the manufacturer’s instructions. The following immunoblot analyses were performed as described above. Antibodies for immunoprecipitation: ILK (4 µg per immunoprecipitation; SantaCruz), c-Fos (2 µg per immunoprecipitation; SantaCruz). Primary antibodies: ILK (1:200; SantaCruz), c-Fos (1∶200; SantaCruz), kindlin-1 (1∶500; polyclonal rabbit; Abcam), dyskerin (1∶200; SantaCruz)
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2

Immunohistochemical Analysis of Hippocampal Neurogenesis

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Brains were cut into 40 µm coronal sections on a microtome (LEICA SM2010; Leica Biosystems, Inc., Deer Park, IL, USA) and stored at 4 °C in a cryoprotective solution, then processed for immunohistochemistry until required. Immunohistochemistry for Ki67 detection (1:500; Abcam, Waltham, MA, USA), BrdU (1:500; BD-Pharmigen®, Franklin Lakes, NJ, USA), DCX (1:250; Abcam, MA, USA), c-fos (c-fos 1:500; Santa Cruz Biotechnology, Inc., Dallas, TX, USA), or Iba-1 (1:1000; Wako Chemicals, Co., Richmond, VA, USA) was performed using the peroxidase method in series of every sixth section, as previously reported [41 (link),45 (link),46 (link),52 (link)]. All Ki67-, BrdU-, DCX-, c-fos-, and Iba-labeled cells were counted throughout the rostro-caudal extension of the hippocampus, using a light microscope (Leica microsystems, Wetzlar, Germany, Germany). In the DG, the quantification of BrdU-, Ki67-, DCX-, c-fos, and Iba-labeled cells was limited to the granular cell layer (GCL) and sub-granular zone (SGZ). The latter region was defined as a band, limited by three nuclei down from the apparent border between the GCL and the hilar region (H). To obtain the estimated total number of Ki-67-, BrdU-, DCX-, c-fos, or Iba-labeled cells, the resulting number of positive cells for each marker was multiplied by six [41 (link),52 (link),53 (link),54 (link),55 (link)].
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3

Investigating Oxidative Stress Signaling

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Primary antibodies against gp91phox/NOX2, p47phox, acetylated α-tubulin, p65, IkB, c-fos, and c-jun were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Total-ERK, total-p38, total-JNK, phosphor-ERK, phosphor-p38, phosphor-JNK, β-actin, and HDAC6 were purchased from Cell Signaling Technology (Beverly, MA, U.S.A.). Hindsiipropane B was synthesized from commercially available starting materials with the Wittig-Horner reaction, Claisen-Schmidt condensation and hydrogenation as key steps (14 (link)). 10 mM stock solution of hindsiipropane B was prepared in dimethyl sulfoxide. Oligonucleotide primers (HDAC6, CCL2, CXCL8, CXCL10, Nox2, p22phox, p47phox, and β-actin) (Bioneer, Seoul, Korea) were obtained from commercially.
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4

Protein Expression Analysis by Western Blot

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Cells were lysed with RIPA Lysis buffer (Pierce Biotechnology, Rockford, IL, USA). The protein concentration in the supernatants was determined using the Bradford method [24 (link)]. Protein samples (30 μg) were separated in sodium dodecyl sulfate-polyacrylamide gels and transferred to polyvinylidene fluoride membranes (GE, Buckinghamshire, UK) using a western blot apparatus. Each membrane was blocked in blocking buffer (2% bovine serum albumin or 5% skim milk) and then incubated with primary antibody ( phospholipase C gamma 2 (PLCγ2), p-ERK, p-JNK, p-p38, cAMP response element binding (CREB), p-IκBα, p-PLCγ2, ERK, JNK, p38, CREB (Cell signaling Technology, Danvers, MA, USA), NFATc1, c-fos (Santa Cruz Biotechnology, Santa Cruz, CA, USA), β-actin (Sigma-Aldrich)). Horseradish peroxidase-conjugated IgG (1:2000 dilutions) was used as the secondary antibody. Immunoreactivity was detected using a Mini HD6 image analyzer (Uvitec Cambridge, UK).
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5

Periplocin's Modulation of Osteoclastogenesis

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Periplocin was purchased from State General Administration of the People's Republic of China for Quality Supervision and Inspection and Quarantine. The recombinant human RANKL was purchased from Peprotech Biotechnology. M-CSF was purchased from eBioscience. STAT3, phospho-I-κBα, phospho-p65, c-Fos, cathepsin K, NFATc1, Goat Anti-Mouse IgG1-HRP and Goat Anti-Mouse IgG2a-HRP antibodies were purchased from Santa Cruz Biotechnology. I-κBα, TLR4 and MMP-9 antibodies were purchased from Abcam. Phospho-STAT3 Tyr705 antibodies was obtained from Signalway. Alfa-MEM medium, fetal bovine serum and trypsin were purchased from Gibco Inc. TNF-α, IFN-γ, IL-1β, IL-4 and IL-22 ELISA kit were purchased from ebioscience. DMSO and MTT were purchased from Sigma-Aldrich Shanghai, China.
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6

AMPK Regulation Pathway Analysis

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GYY4137 [morpholin-4-ium 4-methoxyphenyl(morpholino) phosphinodithioate], DTT (DL-dithiothreitol), AMPK inhibitors Compound C (6-[4-[2-(1-piperidinyl)eth-oxy]phenyl]-3-(4-pyridinyl)-pyrazolo[1,5-a]pyrimidine), Ara-A (ATP-mimetic, 9-β-D-arabinofuranoside), and MMTS (S-methyl methane thiosulfonate) were purchased from Sigma-Aldrich (St. Louis, MO, United States). Biotin-HPDP and HRP (horseradish peroxidase)-conjugated streptavidin were purchased from Thermo Scientific (Rockford, IL, United States). Primary antibodies for phospho-AMPKα (Thr172), AMPKα, phospho-CaMKKβ (Ser458/495), and CaMKKβ were bought from Cell Signaling Technology (Boston, MA, United States). Primary antibodies for NeuN (neuron-specific nuclear protein), c-Fos, and NPY were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, United States). Primary antibody for GAPDH (glyceraldehyde-3-phosphate dehydrogenase), HRP-conjugated secondary antibodies, fluorescent secondary antibodies, and bovine serum albumin (BSA) were obtained from Beyotime Biotechnology (Shanghai, China). Other agents were all purchased from commercial suppliers. Biotin-HPDP was freshly dissolved in dimethysulfoxide (DMSO) and other drugs were prepared freshly with double-distilled water or buffer solutions to the final concentrations before application.
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7

Signaling Pathway Modulation in Cell Assays

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LicA was purchased from Sigma (St. Louis, MO), and a 100 mM stock solution was prepared in dimethyl sulfoxide (DMSO) and stored at −80°C. DAPI and MTT (3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide) were purchased from Sigma (St. Louis, MO). Antibodies against p-ERK1/2, ERK1/2, p-p38, p38, p-JNK, JNK1/2, uPA, ATF-2, NF-κB (p65), c-jun, c-fos, β-actin, and si-MKK4 were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Horseradish peroxidase-conjugated anti-mouse, anti-goat and anti-rabbit secondary antibodies were obtained from Santa Cruz Biotechnology (Santa Cruz, CA). The JNK1/2 inhibitor, SP600125, was purchased from Calbiochem (San Diego, CA).
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8

Quantifying Trigeminal Nociceptive Activation

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To determine whether irritant exposure, restraint, or periorbital stimulation induced c-Fos expression in spinal trigeminal nucleus caudalis (TNC) neurons, immunocytochemistry was performed as described previously (19). Following overnight fixation, the tissue was rinsed in PBS and then cryoprotected in 10% sucrose for 2 hours followed by 20% sucrose in PBS overnight at 4°C. Frozen coronal sections (40 µm) of the brainstem and spinal cord were obtained serially through the medulla to the third cervical segment and collected free-floating in PBS. The obex was used as the most rostral point and was designated 0.0 mm. The first six serial sections from regions at 1.5, 3.0, 4.5 and 6.0 mm caudal to the obex were processed and examined in each animal. Sections were blocked in 4% normal goat serum and 0.025% Triton-X100 in PBS for 1 hour and incubated with the primary antibody (c-Fos; Santa Cruz (#sc-52); 1:2000) diluted in blocking solution overnight at 4°C. Subsequently, sections were rinsed in PBS, incubated with the secondary antibody (goat anti-rabbit IgG conjugated to HRP, Jackson ImmunoResearch; 4 µg/ml) for 1 hour at room temperature and processed for visualization using DAB. Cells were considered positive for c-Fos immunoreactivity (c-Fos-IR) if the nucleus was densely stained. No reactivity was observed in control sections in which primary antibody was omitted.
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9

Protein Expression Analysis in Cell Lysates

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Collected cell was rinsed twice with phosphate buffered saline (PBS) and then lysed in ice-cold RIPA lysis buffer containing 1% protease inhibitors and phosphatase inhibitor). Total extracted proteins were separated by electrophoresis, and protein bands were transferred to nitrocellulose membranes by transfer. After blocking in 6% bovine serum albumin for 2 h, membranes were reacted with an ACE2, TMPRSS2, PI3K, phosphorylated (p)AKT, AKT, p-mitogen-activated protein kinases (p-MAPKs; pJNK, p-p38, pERK), MAPKs (JNK, p38, ERK), c-jun, c-fos, or GAPDH antibodies (Santa Cruz, CA, USA) diluted 1: 500 in PBS containing Tween-20 overnight at room temperature. Membranes were washed and reacted for 30 min with horse radish peroxidase-conjugated secondary antibody. Proteins were visualized using an enhanced chemiluminescence kit (Amersham Corp. Newark, NJ, USA).
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10

Mechanical Wounding and Cell Survival Assay

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MLO-Y4, OCY454, and primary osteocytes were wounded by glass beads, as previously described (8 (link), 19 (link)), to facilitate wounding large numbers of cells. Vitamin E (Sigma T3251, 220 μM) (19 (link)) or calpeptin (Sigma C8999, 20 μM) (20 (link)) were introduced as indicated 24 hours prior to wounding. Whole cell lysates were collected for western blotting as previously described (21 ), using antibodies against c-fos (Santa Cruz) and β-actin (Sigma). Please see Supplementary Methods for additional details.
To assess cell survival after mechanical wounding, MLO-Y4 cells were wounded by glass beads in the presence of lysine-fixable fluorescein-conjugated dextran (10 kDa, 5 mg/mL+10 mg/mL BSA) containing either 1.8 mM Ca2+, 1.8 mM Ca2++20 μM calpeptin, or 1.5 mM EGTA. Five minutes after wounding, cells were stained with propidium iodide (0.3 μg/mL) to detect dead cells (i.e., unrepaired PMD) and imaged on a multi-photon confocal microscope (Zeiss). Please see Supplementary Methods for additional details. The percentages of PMD-affected cells and dead cells were quantified (Bioquant).
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