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119 protocols using annexin 5 apoptosis detection kit 1

1

Apoptosis Induction Assay in PBMCs

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Obtained PBMC were subjected to a 24 h culture (37 °C at 5% CO2 atmosphere) with the studied compounds. After stimulation, the cells were washed once (centrifuged at 400× g at 4 °C for 5 min) with PBS (phosphate-buffered saline; Biomed Lublin, Lublin, Poland) and then used for staining with fluorescein isothiocyanate (FITC)-labeled Annexin V and propidium iodide (Annexin V Apoptosis Detection Kit I, Becton Dickinson, Franklin Lakes, NJ, USA). This procedure has been described previously [43 (link)].
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2

Annexin-V Apoptosis Assay for HUVEC

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HUVEC viability was assessed by Annexin-V (PE) and ViaProbe (PercP) staining using the Annexin-V apoptosis detection kit I (Becton Dickinson, Franklin Lakes, NJ, USA) and measured by flow cytometry (Additional file 1B and C). Data were analyzed using Kaluza Analysis 2.1 software (Beckman Coulter, Brea, CA, USA).
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3

Evaluating Compound Effects on PBMC

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Biological activity was evaluated on fresh peripheral blood taken from healthy donors. Informed consent was obtained from donors at the Occupational Medicine Clinic located in Dr. Antoni Jurasz University Hospital in Bydgoszcz, Poland. Immediately after the blood was taken, the cell isolation was performed by using the density gradient centrifugation (Lymphosept, BioWest, Nuaillé, France) as previously described [23 (link)]. After isolation, PBMC were used to conduct experiments which assessed toxicity of compounds and their impact on proliferation and cytokine production. The preparation of cell culture was described previously [23 (link)]. PBMC were stimulated with all tested compounds in highest doses (100 µg/mL). Additionally, we used ibuprofen as a reference drug in this study. For checking the number of viable cells, the Annexin V Apoptosis Detection Kit I (Becton Dickinson, Franklin Lakes, NJ, USA) was used. The procedure of staining was described previously [23 (link)].
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Quantifying Apoptosis in Melanoma Stem Cells

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To examine apoptosis of melanoma stem cells, FITC (fluorescein Isothiocyanate)-Annexin V apoptosis detection kit I (Becton, Dickinson and Company, USA) was used. Cells were collected and washed with cold PBS and then resuspended in 1× annexin binding buffer. Subsequently, 5 μl of Alexa Fluor488 Annexin V and 5 μl of propidium iodide (PI) were added into the cells. After incubation at room temperature for 15 min in dark, 400 μl of 1 × annexin binding buffer was added into the sample. All samples were analyzed with a flow cytometer at an excitation of 575 nm.
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5

Single Cell Apoptosis Assay

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Eight microtissues, harvested in 96-well plates were transferred into 5 ml FACS tubes (Falcon) and washed once with 2 ml PBS. Afterwards, microtissues were solubilized into single cell suspension by adding 300 μl Accumax (Miltenyi Biotech) per microtissue incubating them for 20 minutes at 37°C. After ten minutes microtissues were mixed and pipetted up and down to obtain a homogen solution. This procedure was repeated after 20 minutes of incubation. Now the digestion was stopped with 2 ml complete cell culture medium, then the cells were centrifuged at 300 g for ten minutes and washed twice with 0,5% BSA/PBS. Afterwards, cells were stained with 4 μl Propidium Iodide (PI) staining solution and 4 μl of Annexin V APC. Staining was performed in 100 μl Annexin Binding Buffer taken from the Annexin V Apoptosis Detection Kit I (Becton Dickinson) for 15 minutes. Finally, cells were analyzed on a BD FACS Calibur immediately. Each data measurement was made up from eight pooled microtissues, repeating the whole procedure independently three times.
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Annexin V-FITC and PI Apoptosis Assay

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Cells were collected and stained with the FITC (fluorescein isothiocyanate) Annexin V Apoptosis Detection Kit I (Becton Dickinson, USA) according to the manufacturer’s protocol. In brief, the cells were harvested and rinsed with cold phosphate-buffered saline (PBS) and resuspended in 1× Annexin binding buffer at 1 × 106 cells/mL. Subsequently 5 μL of Alexa Fluor 488 Annexin V and 1 μL of PI were added to the cells, followed by incubation at room temperature for 15 min in darkness, and 400 μL of 1× Annexin binding buffer was then added to the sample. The specimen was measured using a flow cytometer at an excitation of 575 nm.
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Annexin V Apoptosis Assay for CHIKV-Infected Cells

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The Mock and CHIKV infected Vero cells in combination of GA treatment at different doses (50 µM and 100 µM) were harvested after trypsin EDTA treatment as mentioned in Material and Method section. For flow cytometric detection of apoptotic cells, Annexin V staining was carried out by using BD Annexin V Apoptosis Detection Kit I(BD Biosciences, USA) [44] (link)according to manufacturer's protocol. Briefly, cells were detached by trypsin EDTA treatment. Cells were washed twice in ice cold PBS and then resuspended in 100 µl of 1X Annexin V binding buffer at a concentration of 1×106 cells/ml. Then 2.5 µl of APC conjugated Annexin V was added per sample, gently vortexed and incubated for 15 min at RT (25°C) in the dark. After incubation, 400 µl of 1X Annexin V binding buffer was added to each tube and analyzed by BD FACS Caliburflow cytometry with CellQuest pro software (BD Biosciences, USA). A total of approximately 5×103 cells were acquired for each sample.
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8

Measuring Cell Proliferation and Apoptosis

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Cell proliferation and viability were assessed by XTT or by cell counting with trypan blue exclusion32 (link). In some experiments, cells were treated with doxorubicin (0.3 μM for SH-SY5Y cells, 0.1 µM for U937; Fresenius, Kabi USA, LLC, Lake Zurich, IL). Apoptosis was quantitated by staining with BD Annexin V Apoptosis Detection Kit I and analysis using Flow cytometry on 10-color BD FACSCanto.
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9

Analyzing Apoptosis in SH-SY5Y Cells

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The apoptotic rate of SH-SY5Y cells was analyzed by the Annexin V apoptosis detection kit I (BD Biosciences, San Jose, CA, USA) and flow cytometry (BD Biosciences).
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10

Isolation and Characterization of Innate Lymphoid Cells

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ILCs were sorted from fresh PBMCs as CD117+CD127+CD56+ cells, as described elsewhere.11 (link) Separately, CD3CD14CD19CD117CD127 CD56+ NK cells and CD3+ T cells were also sorted. For comparison with ILCs from patients with CVID and control subjects, ILCs were similarly sorted from splenocytes of fresh spleens from healthy subjects removed because of trauma.11 (link) Cells were stained with appropriate mixtures of fluorochrome-labeled antibodies (see Table E1) and sorted with a FACSAria II (BD Biosciences) after exclusion of dead cells by using the LIVE/DEAD Fixable Violet Cell Stain Kit (Invitrogen, Carlsbad, Calif). The purity of sorted cells was consistently greater than 97%. To further examine sorted circulating ILCs, cells (5 × 104/well) were plated in 96-well U-bottom plates and then cultured for 3 to 5 days in complete RPMI medium with 10% FBS, penicillin, and streptomycin (10 U/mL), with or without 50 ng/mL IL-7, 50 ng/mL IL-1β, or both (PeproTech, Rocky Hills, NJ), as previously described.11 (link) The survival of the sorted ILC population after culture was measured with the Annexin V Apoptosis Detection Kit I (BD PharMingen). Cells were acquired with an LSR Fortessa (BD) and analyzed by using FlowJo software (Tree Star), with comparisons with isotype-matched antibody controls.
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