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3 protocols using mm 2.7 μm column

1

Quantification of Propranolol in Biofluids

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Marrow was prepared for extraction by homogenization at a 1:1 ratio with 50 mM potassium phosphate buffer pH 7.4. A volume of 20 μL of serum or marrow homogenate was combined with 100 μL of HPLC grade acetonitrile and vortex mixed for two minutes. Subsequent to centrifugation at 14000 rpm for five minutes, the supernatant was transferred to a 96-well plate for liquid chromatograph tandem mass spectrometry (LC/MS-MS) analysis. A calibration curve was formed in mouse plasma from 1.00–200 nM by serial dilution and extracted via the same methodology. An Agilent 1200 system consisting of a binary pump, column compartment and autosampler was used for solvent delivery and sample introduction. Chromatographic separation was performed on an Agilent Zorbax SB C18 2.1 × 50 mm 2.7 μm column via a gradient using 0.1% formic acid in water (A) and 0.1% formic acid in acetonitrile (B). Gradient elution was 95% A ramping to 5% A from 0.0–3.0 minutes, with re-equilibration at initial conditions from 3.0 to 4.0 minutes. The flow rate was 0.75 mL/min, and column temperature was 30°C. Detection of propranolol was obtained using an Agilent 6460 triple quadrupole mass spectrometer, monitoring the transition 260.0 → 116.0 with a fragmentor of 86 V and a collision energy of 21 V. The retention time of propranolol was 1.89 minutes.
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2

LCMS Analysis of Chemical Compounds

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LCMS was performed on an Agilent 1260
Infinity II system. The photodiode array detector HS (215 nm or unless
otherwise stated) coupled directly to an electrospray ionization source
and an Agilent 6120 single quadrupole mass analyzer. Standard RP-HPLC
analysis was performed at 40 °C using an Agilent InfinityLab
Poroshell 120 EC-C8 3.0 × 50 mm 2.7 μm column, fitted with
an InfinityLab Poroshell 120 EC-C8 3.0 × 5 mm 2.7 μm guard
column. The column eluted with a gradient of 0–60% ACN in 0.05%
aqueous TFA over 9 min at a flow rate of 0.5 mL/min. Mass spectra
were obtained in the positive mode with a scan range of 2–2000 m/z. Buffer A was 0.05% v/v TFA in milli Q water, and buffer B was 0.05% v/v TFA in acetonitrile. 
Identities of final products
were confirmed by high-resolution mass spectrometry (HRMS) spectra,
obtained using an Agilent MS Q-TOF (model G6545XT) using the (+)-ion
mode with a Dual AJS ESI ion source.
Analytical reverse-phase
HPLC was performed using an Agilent 1200
series HPLC system, fitted with an Eclipse XD8-C8 4.6 Å, 5 μm
column. Buffer A was 0.1% v/v TFA in milli Q
water, and buffer B was 0.08% v/v TFA in acetonitrile.
The column eluted with a gradient of 0–60% ACN in 0.08% aqueous
TFA over 10 min at a flow rate of 1 mL/min.
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3

Quantitative LC-MS Analysis of Nucleotides

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Calu-3 cells treated for 24 h with the indicated drugs were snap-frozen in liquid nitrogen, and thawed cell pellets on ice were homogenized with ice-cold 80% methanol. The samples were vortexed for 10 s to lyse cells and the cell homogenate was spiked with isotopically labelled nucleotide internal standards. The mixture was extracted with ice-cold methanol, vortexed and centrifuged at 18,100g for 5 min at 4 °C. The supernatant was dried under nitrogen at 45 °C and reconstituted in 50% methanol for liquid chromatography–mass spectrometry on an Agilent 1290 Infinity UHPLC/6495B triple quadrupole mass spectrometer. A 12-min linear gradient from 95% B (acetonitrile) to 54% A (10 mM ammonium acetate, pH 9, and 0.1% medronic acid) on an Agilent PEEK HILIC-z 2 × 100 mm, 2.7-μm column was used to separate nucleotides. Multiple reaction monitoring was used to quantitate a fragment ion of the parent ion of each nucleotide with standard calibration curves. The raw data were normalized from μM to nmol mg−1 protein using a BCA assay from input samples.
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