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19 protocols using loricrin

1

Immunohistochemical Analysis of Skin Markers

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Paraffin-embedded TMA sections were used for immunohistochemistry. Immunohistochemical stains were prepared as described in previous reports [20 (link),21 (link)]. After deparaffinization, the sections were rehydrated with a sequential treatment of 100%, 90%, and 70% ethanol solutions. Then, they were incubated with a peroxidase-blocking reagent for 30 min to avoid endogenous peroxidase activity, and with a serum-free protein block for 15 min at room temperature (RT) to block nonspecific antibody binding. They were applied with primary antibodies of loricrin (Abcam, Boston, MA, USA) and filaggrin (Abcam) for 30 min at 37 °C. loricrin and filaggrin were detected using diaminobenzidine (DAB) as a substrate. The degree of staining was measured by scoring system from 0 to 3 (0: no staining; 1: mild; 2: moderate; 3: strong) and reported as the mean ± SEM. Keratinocyte proliferation was stained as PCNA-positive cells with anti-PCNA antibody (Abcam) and counted in the basal and supra-basal cell layers from each section.
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2

Immunofluorescence Staining of hiPSCs-KCs

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A total of 300 µL of each of primary antibody K14 (1:200), involucrin (1:200), loricrin (1:200), and COL7A1 (1:200) (Abcam, United States) dilutions diluted in phosphate buffered saline (PBS) were added to hiPSCs-KCs and incubated overnight according to the manufacturer's instructions. On the following day, after washing the cells using PBS, the corresponding fluorescent secondary antibodies Goat anti-mouse (1:200), and Goat anti-rabbit (1:200) were added and incubated in the dark at 37 °C for 1 h. After 15 min in the dark at room temperature, 300 µL of DAPI (1:1000 dilution) was added, and the images were acquired using an inverted fluorescence microscope.
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3

Analyzing AMBRA1 Expression in Melanoma

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Formalin‐fixed, paraffin‐embedded tissue sections (5 μm) were derived from primary melanomas from each cohort. The IHC methodology for AMBRA1 (Abcam, Cambridge, U.K.), loricrin (Abcam) and cytokeratin 5 (Novocastra; Leica Biosystems, Milton Keynes, U.K.) are detailed in Appendix S1 (see Supporting Information).
Semi‐quantitative analysis of epidermal AMBRA1 expression was undertaken using Leica Digital Image Hub software (Leica Biosystems). Up to 10 representative ×200 microscope fields were analysed for mean positive pixel intensity of AMBRA1 expression levels and compared to the mean AMBRA1 expression in the epidermis directly above the melanoma, allowing a relative percentage expression change to be calculated with the normal epidermis considered as 100% expression.
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4

Histological Analysis of Skin Samples

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Tissue sections (6 μm) were prepared and stained with hematoxylin and eosin (H&E) or Gomori’s trichrome containing methyl (aniline) blue for analysis of collagen I/III (Histopathology Core Facility, Rutgers University, Piscataway, NJ). For immunohistochemistry, tissue sections were deparaffinized, and blocked at room temperature with 1% goat or 1% horse serum for 2 hr and then incubated at room temperature for 30 min, or overnight at 4°C with primary rabbit affinity purified polyclonal antibodies to loricrin (1:400, Abcam, Cambridge, MA), keratin 10 or keratin 17 (1:200, Covance, Princeton, NJ), or with monoclonal antibodies to E-cadherin (1:300, Cell Signaling, Danvers, MA), or PCNA (1:300, Millipore, Burlington, MA) and mouse IgG (ProSci Inc., Poway, CA), or rabbit IgG (ProSci Inc.) as controls. After washing, tissue sections were incubated for 30 min with biotinylated goat anti-rabbit- or goat anti-mouse-secondary antibodies (Vector Labs, Burlingame, CA). Antibody binding was visualized using a DAB Peroxidase Substrate Kit (Vector Labs). Images of tissue sections were acquired at high resolution using an Olympus VS120 Virtual Microscopy System and analyzed using OlyVIA version 2.9 software (Center Valley, PA).
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5

Western Blot Analysis of Skin Barrier Proteins

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Collected cells were homogenized in RIPA lysis buffer (Atto, Tokyo, Japan) and then prepared by centrifuging at 10,000 g for 10 min. For nuclear and cytosolic fractions, cells were lysed with nuclear or cytoplasmic extraction reagents (Pierce/Thermo Scientific, Rockford, IL, USA) according to the manufacturer's protocol. Next, 30 μg of proteins was separated by 10–12% SDS-PAGE and transferred onto polyvinylidene difluoride (PVDF) membranes. After blocking for 1 h at 37°C in 5% skim milk (in 1x TBS), the membranes were incubated with primary antibodies and then incubated with horseradish peroxidase-conjugated anti-IgG secondary antibody. Anti-IκB-α, P-IκB-α, NF-κB p65, STAT1, and P-STAT1 were purchased from Cell Signaling Technology Inc. (Danvers, MA, USA). Antiinvolucrin, loricrin, and filaggrin were purchased from Abcam Inc. (Cambridge, MA, USA). An anti-β-actin antibody was purchased from Sigma-Aldrich Inc. (St. Louis, MO, USA). All bands were detected by enhanced chemiluminescence (Bio-Rad, Hercules, CA, USA). The band intensities of specific proteins were quantified using Gelquant 2.7 (DNR Bio-Imaging Systems, Jerusalem, Israel).
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6

Immunostaining of Skin Cell Markers

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Immunostaining was performed for the expression of keratinocytes specific markers: CK5, CK10, involucrin (Sigma Aldrich, USA), and loricrin (Abcam, UK) and dermal fibroblast specific markers, collagen-3 (Santa Cruz Biotechnology, USA), desmin (Santa Cruz Biotechnology, USA), FAP-α (Abcam, UK), and procollagen-1 (Santa Cruz Biotechnology, USA). Briefly, cells were washed with PBS three times and treated with 4% paraformaldehyde (PFA) for 15 minutes. The fixed cells were washed with PBS (5 × 3 times) and incubated with the primary antibodies overnight at 4°C. Incubation at room temperature with respective secondary antibodies (1 : 200) was performed for 1 hour at 37°C. After washing with PBS, cell nuclei were stained with DAPI (Sigma Aldrich, USA) and observed microscopically.
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7

Comprehensive Antibody Validation Protocol

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The following primary antibodies were commercially purchased: Rab25 (3F12, Novus, Rockford, IL, USA, 1:10K for WB and IHC), Kertin1 (ab185628, Abcam, Cambridge, Cambs, UK, 1:1K for WB and IHC), Keratin 5 (ab52635, Abcam, 1:500 for WB and IHC), Keratin 10 (ab76318, Abcam, 1:3K for WB and IHC), Keratin 14 (ab1851595, Abcam, 1:4K for WB and IHC), BrdU (033990, Novex, Frederick, MD, USA, 1:2K for IF), Involucrin (MA5-11803, Invitrogen, Waltham, MA, USA, 1:100 for WB and IHC), Loricrin (ab24722, Abcam, 1:500 for WB and IHC), Ceramide (ALX-804-196, Enzo, Farmingdale, NY, USA, 1:100 for IHC), and GAPDH (ab181602, Abcam, 1:10K for WB).
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8

Comprehensive Skin Tissue Analysis

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Mice skin tissue (dorsal and tail skin) at various postnatal day ages were collected and fixed by neutral buffered formalin (NBF) or directly embedded in OCT compound (Tissue-Tek) and frozen. Immunofluorescence assays (IF) and Immunohistochemical analysis (IHC-P) was performed as previously described7 (link). Paraffin embedded tissue blocks were sectioned and Haematoxylin and Eosin staining (H&E) was performed to analyze the phase of the hair follicle cycle. Immunofluorescence assays (IF) and Immunohistochemical analysis (IHC-P) was performed on OCT frozen tissue and Paraffin embedded block respectively23 . Tail whole mount was performed as described previously48 (link). Briefly, tail skin was incubated in 5 mM EDTA followed by separation of epidermal sheet from dermis followed by fixing with 2% formaldehyde for 10 minutes. Nile red was used to stain the sebocytes of sebaceous gland and confocal microscopy was used for image acquisition. Primary antibodies used such as: CD34 (1:100, BD Pharmingen); α-6 integrin (1:100, BD Pharmingen); BrdU (1:250, Abcam); Ki67 (1:100; Novocastra); Filaggrin (1:1000, Abcam); Loricrin (1:1000, Abcam); K10 (1:1000, Abcam); Lrig1 (1:500, R&D systems) and Sox9 (1:500, Merck Millipore).
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9

Western Blot Analysis of Skin Markers

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Western blot analysis was performed as previously described (Park et al., 2011 (link)). Cell lysates, prepared in radio-immunoprecipitation assay (RIPA) buffer, were resolved by electrophoresis on a 8 to 10% SDS-PAGE gel. The resultant bands were blotted onto nitrocellulose membranes, probed with anti-human β-actin (Santa Cruz Biotechnology, Santa Cruz, CA, USA), keratin 5 (Bioworld, St. Louis Park, MN, USA), keratin 10 (Santa Cruz Biotechnology), loricrin (Abcam, Cambridge, MA, USA), involucrin (Santa Cruz Biotechnology), SPT (Santa Cruz Biotechnology), CerS (Santa Cruz Biotechnology), and SPPase (Abcam), and detected by chemiluminescence reagent (SurModics, Eden Prairie, MN, USA).
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10

Histological and Immunochemical Characterization of Tissues

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Native tissue and tissue models were fixed in Roti®-Histofix (Carl Roth, Karlsruhe, Germany) for 2 hours before generating histological cross-sections of 4 µm thickness. As an overview of general histological features, tissue slides were stained with hematoxylin and eosin (H&E; Morphisto, Frankfurt am Main, Germany). For immunohistochemical staining tissue slides were rehydrated and blocked with 5% donkey serum for 30 minutes. Subsequently, the primary antibodies cytokeratin 3/12 (1:100 dilution; Bioss, MA USA), cytokeratin 1 (1:1000 dilution; Abcam, Cambridge, United Kingdom), cytokeratin 14 (1:100 dilution; Sigma-Aldrich, Munich, Germany), involucrin (1:200 dilution; Thermo Scientific Fisher, MA USA) and loricrin (1:500 dilution; Abcam, Cambridge, United Kingdom) were added and incubated at 4 °C overnight. After washing, the slides were exposed to the matching secondary antibodies Alexa Fluor® 555 donkey anti-mouse or Alexa Fluor® 555 donkey anti-rabbit (1:400 dilution; Thermo Fisher Scientific, Waltham, MA USA) for 30 minutes at room temperature. The sections were covered with Fluoromount-G DAPI (Thermo Fisher Scientific, Waltham, MA USA) to visualize the cell nuclei.
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