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9 protocols using cd43 apc

1

Western Blotting and Flow Cytometry Antibodies

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Western blotting antibodies were HMGN1 (Aviva Systems Biology, #ARP38532_P050), HMGN1 (Abcam, #ab5212), mouse HMGN1 (affinity purified rabbit polyclonal)34 (link),35 (link), H3K27me3 (Cell Signaling Technologies, #9733, rabbit polyclonal), total H3 (Cell Signaling Technologies, #9715, rabbit polyclonal), and α-tubulin (Sigma, #T9026, mouse monoclonal). Flow cytometry antibodies were B220-Pacific Blue (BD Pharmingen, #558108, clone RA3-6B2), CD43-APC (BD, #560663, clone S7) or CD43-FITC (BD, #561856, clone S7), CD24-PE-Cy7 (BD, #560536, clone M1/69), BP1-PE (eBiosciences, 12-5891, clone 6C3) or BP1-FITC (eBiosciences, 11-5891, clone 6C3), CD45.1-PE-Cy7 (eBiosciences, 25-0453, clone A20), and CD45.2-APC (eBiosciences, 17-0454, clone 104). ChIP-seq antibodies were H3K27me3 (Cell Signaling Technologies, #9733), H3K4me3 (Abcam, #ab8580), and H3K27ac (Abcam, #ab4729).
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2

Multicolor Flow Cytometry Analysis

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Cell surface marker expression analysis was conducted by flow cytometry using either a FACSCalibur (for 3-color panels, Becton Dickinson, East Rutherford, NJ) or a BD FACSCanto flow cytometer (for 6-color panels) after fluorescent antibody labeling. All antibodies were provided by BD Biosciences (San Jose, CA) as follows: CD31-APC Cy7 (clone WM59), CD31-FITC (WM59), CD34-PErCP Cy5.5 (clone 8G12), CD34-PE (clone 563), CD34-FITC (clone 581), CD38-APC (Clone HIT2), CD43-APC (clone 1G10), CD45-APC (Clone HI30), CD45-APC Cy7 (Clone 2D1), CD45RA-APC H7 (Clone HI100), CD49f-PE (Clone GoH3), CD73-APC (clone M-A712), CD90-PE Cy7 (Clone 5E10), CD144-FITC (Clone 55-7H1), CD235a-PE Cy7 (clone GA-R2), CD235a-PE (clone GA-R2), and DLL4-PE (Clone MHD4-46). Sorting experiments were performed using a BD FACSAria II instrument.
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3

Flow Cytometric Analysis of B Cell Subsets

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B cell subsets were identified with following anti-human antibodies: CD19 PE Cy5.5, anti-IgM APC, CD27 FITC, anti-IgD PerCP Cy7, CD21 PerCP Cy7, FCμR PE (clone HM14), mouse IgG1κPE (isotype), CD20 PE and CD43 APC, all from BD Pharmingen (San Jose, California). TLR2 (Pam3CSK4), CpG (ODN 2006) were purchased from InvivoGen (San Diego, California). In Initial experiments, HM14 mAb monoclonal antibody against FcμR [7 (link)] provided by Kubagawa was used. Thereafter, commercial antibodies (same clone) were used.
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4

Western Blotting and Flow Cytometry Antibodies

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Western blotting antibodies were HMGN1 (Aviva Systems Biology, #ARP38532_P050), HMGN1 (Abcam, #ab5212), mouse HMGN1 (affinity purified rabbit polyclonal)34 (link),35 (link), H3K27me3 (Cell Signaling Technologies, #9733, rabbit polyclonal), total H3 (Cell Signaling Technologies, #9715, rabbit polyclonal), and α-tubulin (Sigma, #T9026, mouse monoclonal). Flow cytometry antibodies were B220-Pacific Blue (BD Pharmingen, #558108, clone RA3-6B2), CD43-APC (BD, #560663, clone S7) or CD43-FITC (BD, #561856, clone S7), CD24-PE-Cy7 (BD, #560536, clone M1/69), BP1-PE (eBiosciences, 12-5891, clone 6C3) or BP1-FITC (eBiosciences, 11-5891, clone 6C3), CD45.1-PE-Cy7 (eBiosciences, 25-0453, clone A20), and CD45.2-APC (eBiosciences, 17-0454, clone 104). ChIP-seq antibodies were H3K27me3 (Cell Signaling Technologies, #9733), H3K4me3 (Abcam, #ab8580), and H3K27ac (Abcam, #ab4729).
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5

Multiparameter Flow Cytometry Immunophenotyping

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Cells were digested into single cells and suspended in PBS with 2% FBS. The cell suspension was incubated with the antibody for 30 min at 4°C. After the incubation, the expression of the markers in this study were analyzed by the CytoFLEX Flow Cytometer (Beckman); for cell sorting, cells were sorted by the Moflo (Beckman), and then analyzed using FlowJo (Treestar). The following antibodies were purchased from BD Biosciences: CD11b-APC-Cy7, CD34-PE, CD43-APC, CD14-FITC, CD80-APC, CD86-APC, CD163-PE, CD206-PE, CD64-APC, HLA-DR-APC, CD25-PE, CD69-APC. LAG3-PE, CD3-V500, CD4-FITC, and CD8-PE.
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6

Immunophenotyping and Cell Cycle Analysis

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Cells were stained using antibodies directed against: CD43-APC,
B220-FITC, CD19-APC-Cy7, CD43-PE, Streptavidin-APC-Cy7, IgM-FITC, CD16/CD32 Fc
receptor block (all from BD Biosciences), CD19-eFluor450, B220-PerCP-Cy5.5,
BP1-biotinylated and IgD-APC (all from eBiosciences). For cell-cycle analysis 1
x 106 cells were stained with propidium iodide (PI, 50 μg/ml)
in a hypotonic lysis buffer (0.1% sodium citrate, 0.1% triton X-100, 100
μg/ml RNAse) and incubated at 37°C for 30 minutes. Analysis of
apoptotic fractions was performed by staining with Annexin V and 7-AAD from the
Annexin V Apoptosis Detection Kit eFluor® 450 (eBiosciences)
following manufacturer’s instructions. Samples were analyzed using a FACS
Canto II flow cytometer equipped with 488, 633 and 405 nm lasers (BD
Biosciences). FACS-Plots and calculations were done using the FACS Diva software
version 6.1.2 (BD Biosciences). High-purity FACS-sorting was performed on a FACS
Aria III equipped with a 488 nm laser (BD Biosciences) as described (2 ).
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7

Isolation and Characterization of Immune Cells

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Single-cell suspensions of spleen and LN cells were prepared as previously described [35 (link)]. Joint tissues from hind paws of KSTA mice were dissected free of soft tissue and bones, digested with 100 μg/ml Liberase (Roche) for 45 min at 37oC, and filtered through a 70-μm-pore cell strainer (SPL Life Sciences) to prepare single cell suspensions of synovial infiltrates. The single cell suspensions were stained with an appropriate combination of mAbs and analyzed by FACS. The mAbs used were: CD138-PE, B220-PerCP or -APC-cy7, FAS-PE, CD19-PerCP or -APC, CD21-FITC or -APC, CD43-APC, CD23-PE-cy7, CD8a-PE, CD25-APC-cy7, CXCR5-biotin, GL7-FITC, CD45.2-FITC, CD27-FITC, Ki-67-FITC, Gr-1-FITC, CD4-FITC or -APC-cy7, phospho-Syk-PE, CD11b-PE or -PerCP, PD-1-APC, CD44-APC-cy7, and F4/80-PerCP mAbs (all from BD Biosciences, eBioscience or Biolegend). Streptavidin-PerCP was purchased from BD Biosciences.
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8

Identifying Hematopoietic Stem Cells

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The floating hematopoietic cells were collected after 12–18 days of differentiation. Adherent cells were incubated with collagenase B (Roche) for 2 h, followed by treatment with cell dissociation buffer (Gibco). The cells were passed through a 70-μm cell strainer and incubated with the following fluorochrome-conjugated anti-human antibodies for 1 h at 4 °C: CD31-PE (#555446), CD34-FITC (#555821), CD45-APC (#555485), and CD43-APC (#560198) (all from BD Biosciences). Dead cells were excluded based on staining with 7-aminoactinomycin D (BD Pharmingen, #559925). The expression of HSPC markers was measured using a FACSCantoTMII flow cytometer (BD Bioscience), and the acquired data were analyzed with FlowJo software (Tree Star).
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9

Analysis of B Cell Differentiation

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For analysis of B cell differentiation, 5 x 104 transduced HSCs were transferred to flasks of OP9 stromal cells and co-cultured in B lymphoid-promoting medium (Alpha MEM supplemented with 20% FBS, 1% penicillin-streptomycin, 50 μM 2-mercaptoethanol, 10 ng/mL SCF, 10 ng/mL Flt3L and 10 ng/mL mIL-7 (PeproTech, Rocky Hill, NJ), and 250 ng/mL amphotericin B). Cells were harvested by trypsinization and resuspended in sorting buffer after 7 days of co-culture. Hardy fraction analysis of B cell differentiation was performed as previously described [35 (link)]. Briefly, cells were stained with 7-AAD (eBioscience) and the following antibodies: B220-Pacific blue, CD43-APC, BP-1-BV605, CD24-PE-Cy7, IgD-APC-Cy7, and IgM-PE-CF594 (BD Biosciences). Single-color stained cells and UltraComp beads (eBioscience) were used for compensation and to establish Hardy fraction gating. The following controls were used to exclude OP9 cells and non-transduced cells from ZsGreen+/RFP+ analysis: OP9 cells alone, non-transduced HSPCs alone, and OP9 cells with non-transduced HSPCs. Samples were analyzed on an LSR II flow cytometer and FACS plots were generated using FlowJo software.
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