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13 protocols using paraffin slicing machine

1

Immunohistochemical Analysis of Galectin-3

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A paraffin slicing machine (Leica, Germany), microscope (Olympus, Japan), electrothermostat (Shezhen Ruitai Co., Ltd., China), microwave oven, conventional centrifuge (Beijing BaiYangMedical Devices Co., Ltd.), purified water system (Millipore, Germany), mouse anti-human galectin-3 monoclonal antibody (Santa Cruz Biotechnology, USA), immunohistochemical staining kit SP-9000 (Beijing Zhongshan Biotechnology Co., Ltd., China), and DAB Displaying Kit (Beijing Zhongshan Biotechnology Co., Ltd., China) were used in this study.
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2

Histological Analysis of Tissue Samples

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The tissues (SMGs, pancreas, and brain stem) were fixed in 4% paraformaldehyde solution for 48 h, dehydrated, and embedded in paraffin. Paraffin-embedded specimens were cut into 4 μm-thick sections using paraffin slicing machine (Leica, Braunschweig, German). Sections obtained from SMGs and pancreas tissues were stained with hematoxylin and eosin (H&E) and Alcian Blue Periodic acid Schiff (AB-PAS), while brain tissue sections were stained with H&E and Nissl. Finally, the sections were observed and images were captured using an optical microscope (Olympus, Tokyo, Japan). According to published studies (Sefi et al., 2011 (link); Huang et al., 2018b (link); Tian et al., 2021 (link)), quantitative analyses of histology in the pancreas, SMGs and SSN were respectively performed using ImageJ software. Notably, five different images were captured per rat and at least three different rats were used from each group for comparative analysis.
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3

Histopathological Analysis of Rat Hearts

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To observe the histopathological changes in experimental rats, fresh heart tissues were fixed in 4% paraformaldehyde for over 24 h, washed with running water, dehydrated in automatic organizations dehydration machine (Beijing Jiayuan Xingye Science and Technology), and embedded in wax using a paraffin embedding machine (Hubei Xiaogan Yaguang Medical Electronic Technology Co., Ltd.). Next, tissue blocks were cut into 5 μm thickness sections using a paraffin-slicing machine (Leica, Germany), and mounted onto anti-shedding glass slides. Sections were stained with haematoxylin and eosin (H&E) and Masson’s trichrome stain. All images were obtained using an inverted optical microscope (Nikon, Japan).
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4

Immunohistochemical Analysis of Tumor Samples

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Tumors were excised, fixed in 4% paraformaldehyde (PFA), dehydrated with a graded ethanol series, cleared in dimethylbenzene, and embedded in paraffin. Next, tissue blocks were cut into 4-μm sections by using a paraffin-slicing machine (Leica, Nussloch, Germany), and mounted on glass slides. Tissue sections were deparaffinized and rehydrated, heated in citrate buffer (0.01 M, pH 6.0), and treated with endogenous peroxidase at room temperature. After blocking in 10% goat serum, the sections were stained with rabbit polyclonal anti-Cyclin B1 (1:200) or mouse monoclonal anti-p53 (1:400) primary antibodies and incubated overnight at 4 °C. Subsequently, sections were incubated with secondary antibodies and stained with DAB reagent. Finally, all sections were observed under an electron microscope. Immunopositive expression in cells was quantified with IOD values by using IPP 6.0.
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5

Immunohistochemical Analysis of UBE2T

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A paraffin slicing machine (Leica, Germany) was used to cut paraffin-embedded samples into 4 μm slices. IHC staining was performed following the standard protocol as previously described [18 (link)]. After initial deparaffinization, antigen retrieval, and blockade, the anti-UBE2T antibody (cat#: ab154022, Abcam, Cambridge, MA, United States) was applied to sections overnight at 4 °C in a humidified container. A horseradish peroxidase-labeled secondary antibody (cat#: ab205718, Abcam, Cambridge, MA, United States) followed the next day. DAB (50:1, Novus Biologicals, Centennial, CO, United States) was used to visualize UBE2T staining, followed by hematoxylin counterstain. Sections skipping the primary antibody were used as the negative control. Each sample was designated a score of 0 (negative), 1 (mild), 2 (moderate), or 3 (strong) based on the relative staining intensity. Tissue with score ≤ 1 or ≥ 2 was defined as low and high expression, respectively.
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6

Mouse Forestomach Carcinoma Cell Line Study

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Mouse forestomach carcinoma cell line (MFC) was purchased from the Cell Bank of the Chinese Academy of Sciences (Shanghai); aspirin was purchased from Sigma (St. Louis, MO, USA). RPMI-1640 medium (containing 15% fetal bovine serum, 100 µ/ml penicillin and 100 µ/ml streptomycin) were obtained from HyClone (Logan, UT, USA). Trypsin was obtained from Gibco (Grand Island, NY, USA). PBS was purchased from Shanghai Biological Engineering Company (Shanghai, China). MTT assay (5 mg/ml) was obtained from Sigma (St. Louis, MO, USA). Polyclonal rabbit anti-human E-cadherin was purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA). FITC-labeled goat anti-rabbit IgG was from Beijing Zhong Shan Jinqiao Biological Technology Co., Ltd. (Beijing, China). Centrifuge was obtained from Thermo Fisher Scientific (Waltham, MA, USA) and syringes were from Bio-Rad (Berkeley, CA, USA). Inverted microscope was from Olympus (Tokyo Japan), Eppendorf tubes were obtained from Eppendorf (Hauppauge, NY, USA), super clean bench was from Thermo Fisher Scientific (Waltham, MA, USA), and cell counting chamber was from Shanghai Optical Instrument Factory (Shanghai, China). Paraffin slicing machine and tissue embedder were obtained from Leica (Mannheim, Germany) and ELISA plate reader was from Bio-Rad.
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7

Histological Analysis of Testis Tissue

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After fixed in Bouin’s solution for 24 h, the testis was orderly dehydrated using gradient alcohol. Then, the testis was embedded by paraffin until transparent, then dealt with xylene. The paraffin blocks were cut into slices with 5 μm using a paraffin slicing machine (Lecia, Wetzlar, Germany). Finally, the nucleus and cytoplasm were stained by hematoxylin and eosin, respectively, and the sections were observed by light microscopy (Nikon IQ50, Tokyo, Japan) to classify the gonadal stages.
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8

Evaluating Glioblastoma Cell Line LN28

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The LN28 glioblastoma cell line was purchased from the Chinese Academy of Sciences Cell Bank. The following experimental instruments were used: Micropipette tip (Rainin Instrument LLC, Oakland, CA, USA), optical microscope (Olympus Corp., Tokyo, Japan), polymerase chain reaction (PCR) TC-XP (Bioer Technology Co., Ltd., Hangzhou, China), constant temperature incubator (Changzhou Huapuda Instrument Co. Ltd., Changzhou, China), paraffin slicing machine (Leica, Mannheim, Germany) and tissue embedder (Leica). TRIzol reagent, RNase-free, reverse transcription (RT)-PCR primers, RT kit, quantitative PCR (qPCR) kit, Express SYBR-GreenER miR qPCR kits, NCode VILO miR cDNA (Invitrogen Life Technologies, Carlsbad, CA, USA) and the miR extraction kit (Roche Diagnostics GmbH, Mannheim, Germany) were employed. The rabbit polyclonal primary antibodies p-JAK2 (Cat. no. GTX101132, 1:500) and p-STAT3 (Cat. no. GTX110587, 1:500) were purchased from Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA.
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9

Immunohistochemical Analysis of UBE2T Expression

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We used a paraffin slicing machine (Leica, Germany) to cut paraffin slices at about 4 microns. The slices were baked in a 67°C oven for 2 h and deparaffinized in xylene and rehydrated in graded ethanol, then boiled in citrate buffer (pH 6.0) for 3 min at 100°C and cooled naturally to room temperature. We immersed the sections in 3% H2O2 for 10 min to block the endogenous peroxidase and washed with PBS. Sections were further incubated with anti-UBE2T antibody (cat#: ab154022, Abcam, Cambridge, MA, United States) overnight at 4°C in a humidified container. The next day, the sections were washed with PBS three times and then incubated with a horseradish peroxidase-labeled secondary antibody (cat#: ab205718, Abcam, Cambridge, MA, United States) for 1 h at room temperature. Sections were washed with PBS three times again. A drop of DAB (50:1, Novus Biologicals, Centennial, CO, United States) was added to every section, which was observed under microscopy for timely termination. Hematoxylin was used to counterstain sections briefly, which were observed under a microscope. Finally, sections were dehydrated in ethanol and sealed with neutral resin. In the case of negative control, the primary antibody was omitted. The score of relative staining intensity was 0, 1, 2, 3, and 4. Tissue with score ≤1 or ≥2 was defined as low and high expression, respectively.
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10

Quantifying Muscle Atrophy after Surgery

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At 12 weeks after surgery, the gastrocnemius muscles from the operated and contralateral limbs were removed, their wet weights were measured, and the wet weight ratio (operated/contralateral side) was calculated. The muscle specimens were fixed in 4% paraformaldehyde for 12 hours and embedded in paraffin. The specimens were sectioned consecutively at a thickness of 7 μm using a paraffin slicing machine (Leica). The sections were stained with Masson’s trichrome (Solarbio, Cat# G1340) in accordance with the manufacturer’s instructions. Briefly, sections were stained with Weigert hematoxylin solution for 5 minutes, Masson’s bluing solution for 5 minutes, ponceau-acid fuchsin solution for 5 minutes, and aniline blue solution for 2 minutes. Then, the sections were dehydrated in anhydrous ethanol, sealed with neutral gum, and observed with a bright-field microscope (Leica) (Dong et al., 2021). The cross-sectional areas of the muscle fibers were analyzed quantitatively using Image-Pro Plus 6.0 software.
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