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8 protocols using chlorophenol red β d galactopyranoside cprg

1

Parasite Growth Inhibition Screening

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To determine inhibition of parasite growth, β-Gal activity assay was performed in the preliminary screening as described previously (Liu et al., 2020 (link)). In brief, each compound was diluted fresh by using DMEM without phenol red to a final concentration of 10 μM and added to confluent HFFs in a 96-well half-area plate. Then mechanically released RH-2F tachyzoites were added at a multiplicity of infection (MOI) of 0.2 (parasite/host cell ratio). HFFs treated with 0.1% DMSO were used as the negative control, and 10 μM pyrimethamine was used as the positive control. After incubation for 72 h, 1 mM chlorophenol red-β-d-galactopyranoside (CPRG; Cat # 220588, Sigma-Aldrich) was added to the medium, and the absorbance was monitored at 560 nm. The number of parasites was calculated according to the standard curves made at the same time. Afterward, those compounds that displayed over 70% parasite inhibition ratio were further chosen to assess their cytotoxicity by using a CellTiter 96R AQueous One Solution Cell Proliferation assay system (Promega Corp, United States) according to manufacturer’s procedure. Compounds exhibiting low cytotoxicity (≥80% cell viability) were evaluated for inhibition efficacy in detail.
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2

Quantitative Cell Surface Marker Assay

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1 × 105 of AsPC-1 or MDA-MB-435S cells was plated in 96-well plates and allowed to attach for 24 h. The medium was then replaced with 50 µl of staining buffer (2 % FCS, 0.1 % NaN3 in PBS) containing 2.5 µg of mAb62-β-gal and the cells were incubated with the conjugate for 30 min on ice. After four washing steps, each by immersing the entire plate for 1 min into a tray containing 1 l of washing buffer (130 mM NaCl, 10 mM HEPES pH 7.4, 5 mM KCl, 1 mM CaCl2 and 1 % FCS), 100 µl of freshly prepared substrate solution containing 0.1 % NaN3, 1 % BSA, 2 mM MgCl2 and 2 mg/ml chlorophenol red-β-d-galactopyranoside (CPRG; Sigma) in PBS was added to each well and the increase of absorbance at 570 nm over time was measured immediately in a Wallac 1420 Victor2 Microplate Reader (Perkin Elmer). Five wells were analysed per measurement.
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3

Transcriptional Regulation by miRNAs

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Reporter gene assay was performed to assess the transcription activity of ERG as a result of miRNAs binding. VCaP cells were transfected in 12-well plates (1x105 cells/well) with a reporter plasmid (ERG3ʹUTR-pMIR-RNL-TK), β-galactosidase and miR-4482 or miR-3912 plasmids in triplicates. The cells were lysed after 24 h of transfection and centrifuged at 14,000rpm for 20 minutes. The supernatant (20 μl) was mixed with assay buffer (50 μl) and luciferin (50 μl) in 96-well plate and luminescence were measured. After measurement of luminescence 50 μl of Chlorophenol-red β-d-galactopyranoside (CPRG) (Cat#59767, Sigma-Aldrich, Taufkirchen, Germany) substrate was added in each well, incubated for 2 minutes and measured at 595 nm. Change in CPRG color from yellow to orange/red indicated the activity of β -galactosidase which was used to normalize the luciferase activity [28 (link)].
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4

Dual-Luciferase Reporter Assay Quantification

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Renilla and firefly luciferase activities were determined using the Dual-Luciferase® Reporter Assay System (Promega) according to the manufacturer’s instructions. IRES activity was determined from the ratio of firefly to Renilla luciferase activity (Thermo/Fluoroskan Ascent™ FL) according to the manufacturer’s instructions. β-galactosidase activities were determined using the chlorophenol red-β-D-galactopyranoside (CPRG) (Sigma-Aldrich) according to the manufacturer’s instructions. β-galactosidase value were determined the absorbance at 570 nm.
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5

Rapid E. coli Detection using CPRG Assay

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1 μL of chlorophenol red-β-D-galactopyranoside (CPRG) (purchased from Sigma-Aldrich) dissolved in 2X Bacterial Protein Extraction Reagent (B-PER, purchased from Fisher Scientific) at a concentration of 3 mg mL−1 was placed in the detection region of the device and allowed to evaporate. E. coli in LB and 2X B-PER were pipetted into their respective inlets and were allowed to wet the omniphilic regions of the device. Characterization images were taken on a Nikon D3200 camera with fixed exposure and lighting settings.
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6

Comprehensive Murine Immune Cell Protocols

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Wild-type (WT) C57BL/6 and BALB/c mice were purchased from the Comparative Medicine Center of Yangzhou University (Yangzhou, China). TLR2 knockout (KO), TLR4 KO, MyD88 KO and OT-I mice were purchased from the Nanjing Biomedical Research Institute of Nanjing University (Nanjing, China). PD-L1 KO mice were purchased from The Jackson Laboratory (MMRRC stock # 32234, Bar Harbor, USA). All animal experiments were approved by the Animal Care and Use Committee of Southeast University.
4T1, B16F10, EL4 and Hepa 1–6 were cultured in RPMI 1640 (HyClone) supplemented with 10% FBS (Gibco), 0.05 mM 2-ME (Gibco) and 50 μg/ml Gentamicin (Lonza). Raw264.7 were cultured in complete DMEM (HyClone) medium. B16F10 tumor cells stably transduced with Beclin1-specific short hairpin RNA (shRNA) (BECN1-KD B16F10) and scrambled shRNA (Ctrl-B16F10) were generated previously. All cell lines were detected for Mycoplasma every 2 weeks and were negative prior to use.
LPS, Chloroquine diphosphate, Chlorophenol red-β-D-galactopyranoside (CPRG), and Proteinase K were purchased from Sigma (St. Louis, USA). SB203580 and Stattic were purchased from MCE (Shanghai, China). Recombinant Murine M-CSF, IFN-γ and IL-4 were purchased from PeproTech (Rocky Hill, USA). CFSE was purchased from Invitrogen.
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7

In vitro anti-T. cruzi assays

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In vitro assays against T. cruzi were performed as described previously [12 (link)]. HFF-1 human fibroblasts were seeded at 4x103/well in 96-well tissue culture plates in DMEM (Cultilab) without phenol red and then incubated overnight (37°C, 5% CO2). Next, trypomastigotes were added at 4x104/well, and the plates were incubated (37°C, 5% CO2). After 24 h, 2-fold serial dilutions of the test compounds were added at concentrations ranging from 64 to 0.12 μM, and the plates were then incubated (37°C, 5% CO2). Each compound concentration was evaluated in duplicate. All the plates included BZ (64–0.12 μM) (Sigma-Aldrich) as a positive control and untreated wells (100% growth) as a negative control. After 120 h, chlorophenol red β-D-galactopyranoside (CPRG, Sigma-Aldrich) was added to each well. The absorbance was measured at 570 nm in an automated SpectraMax 384 microplate reader (Sunnyvale, CA, USA), and the data were analysed using GraphPad Prism version 8.0 (San Diego, CA, USA) for IC50 value calculation.
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8

HIV-1 Pseudovirus Susceptibility Assay

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The drug susceptibility of HIV-1 was determined by an enzymatic assay of β-galactosidase activity using TZM-bl cells expressing CD4 and coreceptors CXCR4 and CCR5. For this, the TZM-bl cells were seeded in 96-well plates (104/well) the day before the experiment. Then, various concentrations of PLA2s were added to the cells, followed by inoculation with HIV-1 pseudoviruses at 500 blue cell-forming units (BFU)/well. After 48 h of inoculation with HIV-1, the cells were lysed with PBS containing 1% Triton-X100 and incubated at 37 °C for 1 h with 10-mM chlorophenol red-β-D-galactopyranoside (CPRG; Sigma, St. Louis, MO, USA) in 2-mM MgCl2 and 100-mM KH2PO4. The reaction was stopped by adding 0.5-M Na2CO3. Optical density at 570 nM was measured on a microplate reader (Hidex Sense Beta Plus, Hidex, Turku, Finland). Drug concentrations that brought about 50% inhibition of the β-galactosidase activity were determined.
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