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Rat anti cd4

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The Rat anti-CD4 is a laboratory reagent used for the identification and enumeration of CD4+ T cells in various species, including rats. It is a monoclonal antibody that specifically binds to the CD4 surface antigen expressed on a subset of T lymphocytes. This reagent can be used in flow cytometry and other immunoassay applications to analyze the presence and quantity of CD4+ cells in biological samples.

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8 protocols using rat anti cd4

1

Multiparametric Immunostaining of Murine Lung Sections

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Sequential immunostaining was performed on 3μm thick Formalin-Fixed Paraffin-Embedded (FFPE) murine lung sections. Briefly, heat mediated antigen retrieval was performed in citrate pH 6.0 (antibody Mix 1, ThermoFisher), or in EDTA pH 9.0 (antibody Mix 2, Novus) buffer. Antibody elution was performed between each staining cycle59 . Antibodies used in Mix 1 were; Rat anti-CD4 (1:200, ThermoFisher #14–9766-82), Rat anti-CD8a (1:200, ThermoFisher #14–0808-82) and Rat anti-B220 (1:500, Biolegend #103202). Antibodies used in Mix 2 were; Rabbit anti-IBA1 (1:1000, VWR #100369–764), Rabbit anti-iNOS (1:100, Abcam #ab15323) and Rabbit anti-CD206 (1:500, ProteinTech #18704–1-AP). Secondary antibodies used were: anti-Rabbit 555 (1:500, Cell Signaling #4413S), anti-Rabbit 647 (1:500, Cell Signaling #4414S) and anti-Rat 647 (1:500, Cell Signaling #4418S).
Acquired images were processed using FIJI and the FIJI plugin HyperStackReg V5.660 (and Ved Sharma. 2018, December 13). ImageJ plugin HyperStackReg V5.6 (Zenodo. http://doi.org/10.5281/zenodo.2252521). Autofluorescence acquired in non-relevant channels was substracted as appropriate. IBA1 and iNOS staining quantitation was performed using Ilastik (v1.3.3post2)61 and CellProfiler (v3.1.9)62 .
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2

Multiparametric Immunostaining of Murine Lung Sections

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Sequential immunostaining was performed on 3μm thick Formalin-Fixed Paraffin-Embedded (FFPE) murine lung sections. Briefly, heat mediated antigen retrieval was performed in citrate pH 6.0 (antibody Mix 1, ThermoFisher), or in EDTA pH 9.0 (antibody Mix 2, Novus) buffer. Antibody elution was performed between each staining cycle59 . Antibodies used in Mix 1 were; Rat anti-CD4 (1:200, ThermoFisher #14–9766-82), Rat anti-CD8a (1:200, ThermoFisher #14–0808-82) and Rat anti-B220 (1:500, Biolegend #103202). Antibodies used in Mix 2 were; Rabbit anti-IBA1 (1:1000, VWR #100369–764), Rabbit anti-iNOS (1:100, Abcam #ab15323) and Rabbit anti-CD206 (1:500, ProteinTech #18704–1-AP). Secondary antibodies used were: anti-Rabbit 555 (1:500, Cell Signaling #4413S), anti-Rabbit 647 (1:500, Cell Signaling #4414S) and anti-Rat 647 (1:500, Cell Signaling #4418S).
Acquired images were processed using FIJI and the FIJI plugin HyperStackReg V5.660 (and Ved Sharma. 2018, December 13). ImageJ plugin HyperStackReg V5.6 (Zenodo. http://doi.org/10.5281/zenodo.2252521). Autofluorescence acquired in non-relevant channels was substracted as appropriate. IBA1 and iNOS staining quantitation was performed using Ilastik (v1.3.3post2)61 and CellProfiler (v3.1.9)62 .
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3

Quantification of Immune Cell Populations in Tumor Tissue

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Animal procedures and maintenance were conducted in accordance with the University of Wisconsin-Madison School of Medicine and Public Health IACUC guidelines. Tumor tissue samples were collected, fixed in 10% neutral buffered formalin, and paraffin embedded. Antigen retrieval was performed by heating the sections in 10mM citrate buffer (pH 6.0) in a decloaking chamber. Samples were incubated with rat anti-CD8a (Thermo Fisher Scientific #14080882, 1:500), rat anti-CD4 (Thermo Fisher Scientific #14976682, 1:500), or rat anti-FoxP3 (Thermo Fisher Scientific #14577382, 1:200). Sections were stained using the ImmPRESS HRP Goat Anti-Rat IgG Polymer Detection Kit (Vector Laboratories, Burlingame, CA, #MP-7404–50). Antibody binding was revealed by the addition of 3,3’-diaminobenzidine substrate (Vector Laboratories). Tissues were counterstained with Mayer’s hematoxylin (Thermo Fisher Scientific). Tissues were examined using an Olympus BX51 microscope. Quantitation of staining intensity was performed as previously described26 using FIJI.
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4

Immunofluorescence Staining of Skin Samples

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Skin samples were embedded in OCT (Tissue Tek) and sectioned to 8 μm. HaCaT cells with AQP3 stable overexpression or knockdown were plated in 24-well plates coated with round coverslips and stimulated with 100ng/ml TNF-α (Cat #300-01, PeproTech) in the presence of calcium. The slides and cells were fixed in 4% formalin for 10 min and washed with PBS 3 times for 10 min. Then we blocked with 5% normal donkey serum in PBS supplemented with 0.3% Triton-X100 for 1 h and incubated with primary antibodies at 4 °C overnight. The next day the appropriate fluorophore-conjugated secondary antibodies were used and 4'-6-diamidino-2-phenylindole (DAPI) was used for nuclei visualization. Following primary antibodies were used: anti-human AQP3 (1:100, Sigma-Aldrich), anti-mouse AQP3 (1:500, Abcam), Rat anti-CD4 (1:100, eBioscience), Rabbit anti-p-p65 (1:200, Cell Signaling), Rabbit anti-p65 (1:100, Cell Signaling). The images were acquired using an Eclipse Ni-U Upright Microscope (Nikon) and 5 randomly selected fields were used to count the positive cells. The number of CD4-positive or nuclear p65-positive cells was counted in at least 3 randomly selected microscopic fields (original magnification, 200×) in each sample to calculate the mean number.
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5

Immunohistochemical Analysis of EPRAP and Associated Pathways

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Rabbit polyclonal antibody against mouse EPRAP was raised by immunization with keyhole limpet hemocyanin–conjugated synthetic peptides corresponding to amino-acid residues 244–260, 330–346, and 629–645 of murine EPRAP. For immunohistochemistry of mouse samples, paraffin-embedded sections were routinely stained with one of the following antibodies: rat anti-F4/80 (Abcam, Cambridge, MA, USA), rat anti–Gr-1 (eBioscience, San Diego, CA, USA), rat anti-B220 (eBioscience), rat anti-CD4 (eBioscience), rat anti-CD8 (Abcam), hamster anti-CD11c (eBioscience), mouse anti-NCAM (Abcam), rabbit anti–phospho-NF-κB p105 (Ser933) (Cell Signaling, Boston, MA, USA), rabbit anti–phospho-MEK1/2 (Ser221) (Cell Signaling), or rabbit anti–phospho-p44/42 MAPK (Thr202/Tyr204) (Cell Signaling), or rabbit anti-EPRAP.
For immunohistochemistry of human samples, paraffin-embedded sections were stained with rat anti-CD68 (Abcam), goat anti-FEM1A (Abcam), and rabbit anti–phospho-NF-κB p105 (Ser933), rabbit anti–phospho-MEK1/2 (Ser221), or rabbit anti–phospho-p44/42 MAPK (Thr202/Tyr204) antibodies. Staining with non-immune rat or rabbit IgG served as a negative control for each experiment.
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6

Immunostaining and Imaging of Gamma-Irradiated Mouse Brains

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Eight weeks after gamma knife irradiation modeling, mice were anesthetized and transcardially perfused with cold PBS, followed by 4% paraformaldehyde (PFA). Brains were extracted and placed into tubes filled with 4% PFA for 1–2 h and cryopreserved with gradient sucrose (20% and 30% sucrose) at 4°C. After being embedded with OCT molds, the mice brains were frozen at −20°C and cut into sections (30 μm thickness) for further immunostaining. A blocking solution with 5% bovine serum albumin (BSA; MRC, USA) and 0.3% Triton X‐100 (Sigma‐Aldrich, Germany) was used to block and permeabilize the frozen sections. For IF labeling, frozen sections were incubated with rat anti‐CD4 (1:200; eBioscience, USA) and GZMB (1:50; Abcam, USA) at 4°C overnight, followed by appropriate Alexa Fluor‐conjugated secondary antibody (1:500; Jackson, USA) at room temperature for 2 h. The brain slices were mounted with VECTASHIELD Antifade Mounting Medium (Vector, USA) with 4′,6‐diamidino‐2‐phenylindole (DAPI) and imaged by fluorescence microscope (Leica DM6B; Germany).
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7

Immunofluorescence Imaging of Skin Cells

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Fresh skin tissues from mice were embedded with OCT (Tissue Tek). Skin sections (6 μm) and HaCaT cells grown on round glass coverslips in 24-well plates were fixed with 4 % paraformaldehyde (PBS) for 10 min. Sections were blocked with 5 % donkey serum for 1 h after permeabilization with 0.3 % Triton X-100 for 15 min at room temperature. Primary antibodies were incubated overnight at 4 °C. After washing with PBS, Alexa Fluor 488-conjugated or 594-conjugated secondary antibody (Thermo Fisher Scientific) was added for 1 h at room temperature. Sections were washed and counterstained with 4′, 6-diamidino-2-phenylindole (DAPI). All images were captured with a Nikon DS-Ri2 (Nikon, Japan). The following primary antibodies were used: Rat anti-CD4 (1:100, eBioscience), Rat anti-CD31 (1:100, eBioscience), Rabbit anti-Ki67 (SolA15) (1:500, eBioscience™, #PA5-114437), Rabbit anti-NF-kB p65 (1:100, Cell Signaling) antibodies.
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8

Multiplex Immunohistochemistry for CD4, IL23R, and GATA3

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Multiplex sequential immunohistochemistry was performed with FFPE (5μm) tissue sections as we previously reported (Gunderson et al. 2016 (link)). Primary rat or rabbit antibodies were then serially stained for 1 hour at room temperature using rat anti-CD4 (4SM95, 1:50, eBioscience), Goat anti-IL23R (1:100, Abcam), and rabbit anti-GATA3 (EPR16651, 1:500, Abcam). Histofine Simple Stain MAX PO HRP conjugated polymer (Nichirei Biosciences Inc.) was utilized for detection followed by AEC for peroxidase detection. Multiplex images were coregistered using CellProfiler software (Broad Institute), deconvoluted using Image J, pseudocolored, and merged in ImageScope (Aperio, Leica). High magnification images were created with a 4x zoom from a 20x original magnification. Total positive cells were manually counted for each cross section, and the results were normalized to total tissue area.
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