The largest database of trusted experimental protocols

11 protocols using snail slug

1

Immunohistochemical Analysis of Mammary Gland

Check if the same lab product or an alternative is used in the 5 most similar protocols
IHC was performed to analyse the expression of Mcm2, Stat1, Fak, Slug/Snail and Akt (Abcam) and progesterone receptor (Thermo Fisher). The paraffin embedded sections of mammary gland were stained using the primary antibodies following a previously described protocol using the conditions described in Table 1 [17 (link)]. Following the primary antibody incubation, staining was detected with Novolink polymer (Leica Biosystems) according to the manufacturer’s protocol. The sections were developed using diaminobenzidine (DAB) (Leica Biosystems) to visualise the areas of positive expression. Antibody free negative controls were used along with the use of tissues known to express the specific proteins as positive controls (Figure A2).
+ Open protocol
+ Expand
2

Immunohistochemical Assessment of EndMT

Check if the same lab product or an alternative is used in the 5 most similar protocols
In support of our hypothesis that EndMT is the underlying mechanism for EFE development, the presence of active EndMT was determined in all tissue samples obtained from the operating room. Immunohistochemical double-staining of endothelial cells with an endothelial marker, cluster of differentiation 31 (CD31, 1:100; Dako), and a mesenchymal marker, a-smooth muscle actin (a-SMA, 1:100; Abcam) at the same time, is indicative of active EndMT. In addition, all samples were stained for the transcription factors Twist (1:100; Abcam), which regulate EndMT indicated by Twist-positive nuclei. Nuclei were stained for 4 0 ,6-diamidino-2-phenylindole (1:1000; Dako). Furthermore, active EndMT was confirmed by staining for the transcription factors Slug/Snail (1:100; Abcam). Co-localization with nuclei in endothelial cells is indicative of active EndMT. As all tissue samples contained some muscle tissue, the myocardium was also analyzed for tissue structure and fibrosis on hematoxylin and eosin and MT as well as immunochistochemical staining for desmin to assess cardiomyocytes and EndMT (1:50; Abcam).
+ Open protocol
+ Expand
3

Protein extraction and western blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
To extract total protein, sodium dodecyl sulfate (SDS) lysis buffer (1% SDS, 60 mM Tris-HCl) with protease inhibitor (Roche, Basel, Switzerland) and phosphatase inhibitor (GenDEPOT, Katy, TX, USA) was used. WB was performed as previously reported [28 (link)]. The primary antibodies used were as follows: hexokinase 2 (HK2, ab209847, EPR20839, 1:500), glucose transporter 1(GLUT1, ab652, 1:2000), L-type amino acid transporter 1 (LAT1, ab208776, EPR17573, 1:1000), vascular endothelial growth factor B (VEGFB, ab110649, EPR4555, 1:1000), VEGFC (ab135506, 1:2000), CD133 (ab19898, 1:1000) and Snail/Slug (ab180714, 1:1000) from Abcam (Cambridge, UK), signal transducer and activator of transcription 3 (STAT3, #9139, 1:1000), pSTAT3 (#9145, D3A7, 1:2000) from Cell Signaling Technology (Danvers, MA, USA), and β-actin-HRP (sc-47778, C4, 1:5000) from Santa Cruz Biotechnology (Dalla, TX, USA). For the digital visualization of the chemiluminescent WB, the ChemiDoc XRS (Bio-Rad, Hercules, CA, USA) was used. These experiments were replicated at least three times with similar results. ImageJ (National Institutes of Health, Bethesda, MD, USA) and BioRad Image Lab 6 (Bio-Rad) were used for band quantification.
+ Open protocol
+ Expand
4

Multifunctional Nanoparticle Synthesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
PLGA, PFOB, tetraethoxysilane (TEOS), and (3-aminopropyl) triethoxysilane (APTES) were bought from Aladdin Company (Shanghai, China). PTX was bought from Macklin Company (Shanghai, China), and ICG was bought from Sigma-Aldrich Company (St. Louis, MO USA). Commercial Gd-DTPA was bought from Shering AG (Berlin, Germany). Targeting ligands uPA and RGD were bought from Sigma-Aldrich Company (St. Louis, MO USA) and GL Biochem Ltd. (Shanghai, China), respectively. Fluorescent probes DHE and DPBF were bought from Sigma-Aldrich Company (St. Louis, MO USA). Antibodies against HIF-1α, Vimentin, Snail-Slug, and E-cadherin were bought from Abcam (Cambridge, UK). The water utilized in this study was distilled.
+ Open protocol
+ Expand
5

Protein Expression Analysis by Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total proteins were extracted from cells, and western blotting was performed as previously reported33 (link). The primary antibodies used were: PCNA (Cell Signaling Technology, Danvers MA, USA; #13110; dilution 1:5000); Hexokinase II (EPR20839; 1:500), HIF1α(1:1000), GLUT1 (1:2000), N cadherin (5D5; 1:1000), and Snail/Slug (1:1000), all procured from Abcam (Cambridge, UK); and β-actin-HRP (Santa Cruz Biotechnology, Dalla TX, USA; C4; dilution 1:1000). Western blotting experiments from biological replicates showed similar expression data, attesting to the reproducibility of the results. For band quantification, images were analyzed using Image Lab software (Bio-Rad, Hercules, California, USA). For band quantification, images were analyzed using IMT i-Solution software Martin Microscope Company, Easley, USA).
+ Open protocol
+ Expand
6

Epithelial-Mesenchymal Transition Signaling Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
DMEM-F12 medium and foetal bovine serum (FBS) were purchased from the Gibco (Invitrogen, USA). Penicillin, streptomycin and BCA protein assay kits were purchased from the Solarbio (Beijing, China). Polystyrene plate for transwell was purchased from the Corning (New York, USA). The primary antibodies were diluted 1:2000 before use, including OLA1 (Cat. #ab229090, Abcam), GAPDH (Cat. #ab9485, Abcam), GAPDH (Cat. #ab8245, Abcam), N-cadherin (Cat. #ab18203, Abcam), E-cadherin (Cat. #ab76055, Abcam), Snail (Cat. #PA5–11923, Invitrogen), Snail + Slug (Cat. # ab180714, Abcam), Zeb-1 (Cat. # ab155249 Abcam) and SMAD2 (Cat. #5339, Cell Signaling Technology), p-SMAD2 (Cat. #18338, Cell Signaling Technology), SMAD4 (Cat. #9515P, Cell Signaling Technology). TGF-beta 1 antibody (Cat. # 21898–1-AP) was purchased from ProteinTech (Wuhan, China). All the chemical compounds were analytically pure reagents.
+ Open protocol
+ Expand
7

Western Blot Analysis of HCC Cell Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
HCC cells were lysed in ice-cold RIPA lysis buffer with protease inhibitor and phosphatase inhibitor. Protein concentration was determined by using the BCA method. Thirty micrograms of total protein was separated by SDS-PAGE and transferred onto PVDF membranes (Millipore, USA). The membranes were blocked in 0.5% BSA for 1 h at room temperature and incubated overnight with antibodies to PTEN, FOXO3, PI3K, AKT, p-AKT, ERK1/2, p-ERK1/2, C-myc, active caspase3, Bcl2, Bax, E-cadherin, TIMP1, MMP2, snail/slug, twist, and GAPDH (Abcam, USA). Then, the membranes were incubated with the corresponding HRP-labeled secondary antibodies for 1 h at room temperature. Chemiluminescent signals were captured by the Imager (Tiangen, China).
+ Open protocol
+ Expand
8

Quantitative Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells treated with UA or KU for 24 h were washed twice with ice-cold PBS and lysed in lysisbuffer26 (link). Antibodies against E-cadherin (61018, BD Biosciences, San Diego, CA, USA), N-cadherin (610921, BD Biosciences), Snail/Slug (ab180714, Abcam, Cambridge, MA, USA), Twist (ab49254, Abcam), PARP (9542, Cell Signaling), Caspase-3 (9662, Cell Signaling), α-Tubulin (2125, Cell Signaling), and ZEB2 (HPA003456, Sigma) were detected with horseradish peroxidase-conjugated secondary antibody (Thermo Fisher Scientific, Waltham, MA, USA) with the use of Immobilon Western Chemiluminescent HRP Substrate Kit (Merck Millipore, Billerica, MA, USA) and luminescence imaging (Image Quant LAS 4000 mini). Multi-Gauge 3.0 was used to measure bands, and relative density was calculated based on the density of the α-Tubulin bands in each sample. Expression of values were as arbitrary densitometric units corresponding to signal intensity.
+ Open protocol
+ Expand
9

Western Blot Analysis of Key Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
The whole-cell lysates were generated using the Whole Cell Lysis Assay Kit (KeyGEN, China) according to the manufacturer’s protocol. The protein concentration was detected by the BCA method (Thermo Fisher Scientific, USA). β-Actin (1: 1000, Abcam, UK) was used as an internal control. Primary antibodies included ISL1 (0.5 μg/mL, Developmental Studies Hybridoma Bank, USA), GATA3 (1:1000, Invitrogen, USA), E-cadherin (1:10,000; Abcam, UK), N-cadherin (1:5000; Abcam, UK), vimentin (1:1000; Abcam, UK), snail + Slug (1 μg/mL; Abcam, UK), Bcl2 (1:1000; Abcam, UK), Bax (1:1000; Abcam, UK), Activated Caspase3 (1:1000; Abcam, UK), AKT (1:1000, Cell Signaling Technology, USA), p-AKT (1:1000, Cell Signaling Technology, USA), and AURKA (1:1000; Abcam, UK). Secondary antibody included goat anti-rabbit antibody (1:10,000, Jacson ImmunoResearch, USA) or goat anti-mouse antibody (1:10,000, Jacson ImmunoResearch, USA). The ECL chemiluminescence detection system (Bio-Rad, USA) was used for signal detection.
+ Open protocol
+ Expand
10

Comprehensive Immunohistochemistry Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemistry (IHC) was performed the same as standard procedures. Briefly, 5 mm tissue sections were deparaffinized in xylene and rehydrated through a gradual decrease in the concentration of ethanol. The antigen epitopes were then unmasked using sodium citrate buffer (pH 6.0) by a standard microwave heating technique. After hydrogen peroxide blocking and normal serum blocking, Ig Blocking Reagent (Vector Laboratories, Burlingame, CA, USA) was used as a blocking buffer. Subsequently, the sections were incubated overnight at 4 °C with the following primary antibodies: CD44 (abcam, ab24504), GFP (cell signaling, #2956), Ki67 (abcam, ab66155), Snail/Slug (abcam, ab180714), CK19 (abcam, ab15463), E-Cadherin (cell signaling, #3195), Vimentin (abcam, ab45939) and N-cadherin (abcam, ab18203). After primary incubation, sections were incubated with the appropriate biotinylated secondary antibodies (Vector Laboratories, Burlingame, CA, USA), followed by incubation with the ABC reagent (Vector Laboratories, Burlingame, CA, USA). Detection was accomplished using DAB (3,3’-diaminobenzidine) substrates (Vector Laboratories, Burlingame, CA, USA). Incubation of sections with phosphate-buffered saline (PBS) served as negative controls. Sections were lightly counter-stained with hematoxylin and mounted. The IHC-stained slides were mounted in Micromount (Leica, Nussloch, Germany).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!