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8 protocols using horseradish peroxidase conjugated secondary antibody

1

Hippocampal PSD95 Expression Evaluation

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The rats (n=5 per group) were anesthetized by chloral hydrate, and were perfused transaorticly with normal saline and 4% ice-cold paraformaldehyde. The brain was dissected and paraffin-embedded. The consecutive brain coronal sections (4 μm) were dewaxed, rehydrated and subjected to antigen retrieval in citric acid (Solarbio Life Sciences, Beijing, People’s Republic of China). The sections were blocked with goat serum (Beyotime Biotech) and incubated with anti-PSD95 antibody (Abcam) at 4°C overnight. After being washed, the bound antibodies were detected with horseradish peroxidase-conjugated secondary antibody (LI-COR) and visualized with 3,3′-diaminobenzidine tetrahydrochloride (ZSGB Bio, Beijing, People’s Republic of China), followed by counterstaining with hematoxylin. The cornu ammonis areas CA1, CA2 and CA3, and dentate gyrus regions of the hippocampus were photoimaged under a light microscope (magnification ×200). The integrated optical density in the positively stained areas on the section was statistically analyzed using Image-Pro Plus 6.0 software (Media Cybernetics, Rockville, MD, USA).36 (link)
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2

Investigating SIRT1, p53, and p21 in Lung Tissue

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Western blot (WB) analysis was used to detect SIRT1, p53, and p21 proteins in lung tissues. The frozen lung tissues (100 mg) were ground into powder in liquid nitrogen. RIPA pyrolysis solution containing 1% PMSF was added for 1 mL. The supernatant was centrifuged for 20 minutes at 4°C at 12 000 rpm. The protein content was determined by BCA protein assay kit (Beyotime, China). The protein (30 μg) was subjected to 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), and then transferred to a polyvinylidene fluoride membrane (Millipore Billerica, MA, USA). The membrane was blocked with 5% skim milk for 2 hours at room temperature. We added 1: 250 diluted SIRT1 (ab110304,121kD), p53 (ab131442, 53kD), and p21 (ab109199, 21kD) antibodies and incubate overnight at 4°C. GAPDH (1: 500, 36kD, ab8245) was used as the internal control (antibodies were purchased from Abcam, Cambridge, UK). The samples were incubated with horseradish peroxidase-conjugated secondary antibody (1: 10000; Li-Cor, Inc., USA) for 1 hour at room temperature. ImageJ was performed for the semi-quantitatively analysis.
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3

Quantitative Western Blot Analysis

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Western blot analysis was performed as described previously.19 (link) Briefly, equal amounts of proteins were electrophoresed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and electrotransferred to polyvinylidene difluoride (PVDF) membranes (Merck Millipore, MA, USA). After blocking with 5% non-fat dry milk or 5% bovine serum albumin (BSA) dissolved in Tris-buffered saline with Tween 20 (TBST) for one hour, the membranes were incubated at 4°C with gentle shaking overnight with each of the antibodies listed in Table 2. Then the membranes were washed three times for 10 minutes with TBST and incubated with horseradish peroxidase-conjugated secondary antibodies (LI-COR, NE, USA) for one hour. The bands were visualized with Odyssey infrared scanning (LI-COR) and densitometry was performed using Gel-Pro32 software.
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4

Molecular Signaling Pathways in Osteoclastogenesis

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Phycoerythrin-conjugated rat monoclonal anti-mouse RANK antibody (12-6612) and the isotypic antibody, phycoerythrin-conjugated rat IgG2b (15-4815), were purchased from eBioscience, Inc. (San Diego, CA, USA). Anti-phospho-AKT (Ser473) (9271), anti-AKT (9272), anti-phospho-p44/42 ERK (Thr202/Tyr204) (4370), anti-ERK (4695), and anti-signal transducer and activator of transcription 3 (STAT3) (4904) antibodies were obtained from Cell Signaling Technology, Inc. (Beverly, MA, USA). The antibody against mouse phospho-STAT3 (Ser727) (sc-135649) was purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA). Anti-RANK (ab200369), anti-calcitonin receptor (CTR) (ab11042) and anti-IL-21R (ab5980) and anti-β-actin (ab8229) antibodies were obtained from Abcam (Cambridge, UK). Horseradish peroxidase-conjugated secondary antibodies were purchased from LI-COR Biosciences (Lincoln, Nebraska, USA). Recombinant IL-21, RANKL and M-CSF were obtained from Peprotech, Inc. (Rocky Hill, NJ, USA). AG490 [Janus kinase 2 (JAK2)/STAT3 inhibitor], LY294002 (PI3K/AKT inhibitor), and PD98059 (ERK inhibitor) were supplied by Selleck Chemicals (Houston, TX, USA).
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5

Western Blot Analysis of Dopamine Receptor

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Equal amounts of proteins (60μg) were resolved in 10% SDS-PAGE and transferred onto nitrocellulose membranes. The membranes were blocked with 5% nonfat dry milk, in tris-buffered saline (TBS) with 0.05% tween-20, for 90 min at room temperature. Then the membranes were incubated with rabbit polyclonal D1R (1:500, Millipore, Billerica, MA, AB1765P), rabbit polyclonal GRK4 (1:400, Santa Cruz Biotechnology, CA, SC-13079), rabbit polyclonal GRK2 (1:400, Santa Cruz Biotechnology, SC-562), or rabbit polyclonal GAPDH (1:500, Santa Cruz Biotechnology, SC-25778) antibodies overnight at 4°C. The membrane-bound antibodies were visualized using horseradish peroxidase-conjugated secondary antibodies (1:12,000, Li-Cor Bioscience, 926-32213) and the Odyssey Infrared Imaging System (Li-Cor Bioscience, Bad Homburg, Germany). The densities of the bands were quantified by densitometry using Quantity-One software (Bio-Rad, Hercules, CA), and normalized with GAPDH.
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6

Ephrin-B2 Signaling Pathway Analysis

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The protein expressions levels of ephrin-b2, NFATc1, TRAP, CK, MPP9 and GAPDH were measured with and without ephB4-Fc treatment. After 5 days, radioimmunoprecipitation assay (RIPA) lysis buffer (cat. no. C500005; Sangon Biotech Co., Ltd.) containing 1 µM protease inhibitor was added to 2×107 BMMs in 6-well plates for 15 min. Samples were centrifuged (4°C) at 12,000 × g for 10 min and the supernatant was collected. Total protein concentration was measured by the bicinchoninic acid assay (BCA). Equal amounts of the protein lysates were separated via SDS-PAGE (10% gel) and gels were transferred to polyvinylidene difluoride membranes, blocked for 1 h with 5% (w/v) milk, and incubated at 37°C with primary antibodies against GAPDH (cat. no. #8884; 1:1,000; Cell Signaling Technology, Inc.), C-FOS (cat. no. #2250; 1:1,000; Cell Signaling Technology, Inc.), NFATc1 (cat. no. #8032; 1:1,000; Cell Signaling Technology, Inc.) and TRAP (cat. no. ab133238; 1:1,000; Abcam) overnight. The Odyssey infrared imaging system (LI-COR Biosciences, Lincoln, NE, USA) was used to detect horseradish peroxidase-conjugated secondary antibodies (cat. no. #7074; 1:5,000; Cell Signaling Technology, Inc.) reactivity.
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7

Protein Expression Quantification by Western Blotting

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Western blotting was applied to quantify protein expression. Briefly, cells were rinsed with PBS and then lysed in extraction buffer and phenylmethylsulfonyl fluoride. Cell extracts were centrifuged at 4°C for 10 minutes, and the supernatants were then collected. The protein concentration of cells was measured using bicinchoninic acid protein quantification kit (Beyotime). The same amounts of the samples were separated using 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (Beyotime), and then transferred to nitrocellulose membranes (Beyotime). The membranes were blocked with 5% skim milk, using PBS with 0.05% Tween-20 for 2 hours. The membranes were then probed successively with Col I, Runx2, OPN and β-actin at 4°C overnight. The membranes were washed and then incubated with the respective horseradish peroxidase-conjugated secondary antibodies (LI-COR, Lincoln, NE, USA) for 1 hour at room temperature. Proteins were detected by autoradiography (Bio-Rad). The primary antibodies used in this study are listed in Table 2.
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8

Leydig Cell Protein Expression Analysis

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After the indicated treatments, Leydig cells were lysed in lysis buffer (50 mM Tris-HCl, pH 7.4, 150 mM NaCl, 5 mM EDTA, 1 mM phenylmethane sulfonyl fluoride and 1% Triton X-100). Samples were fractionated by 12% SDS-PAGE and transferred onto polyvinylidene difluoride membranes (Millipore Corp., Bedford, MA, USA). The membranes were blocked with 10% nonfat milk and incubated at room temperature with primary antibodies for 2 h, followed by incubation with horseradish peroxidase-conjugated secondary antibodies (Li-cor Biosciences, Lincoln).
NE, USA; catalogue no. 926-32211, 926-68021) at a dilution of 1:10,000 at room temperature for 1 h. Images were obtained using Odyssey (LI-COR Biosciences, Lincoln, NE, USA). Membranes were then stripped and re-probed with GAPDH antibody to ensure equal protein loading. TNF-α (D2D4, 1:1,000) and AMPK (catalogue no. 23A3, 1:1,000) antibodies were obtained from Cell Signaling Technology, Inc. (Danvers, MA, USA). Interleukin (IL)-1β antibody (catalogue no. CC36131) at a dilution of 1:1,000 was purchased from Bioworld Technology (Nanjing, China). Odyssey infrared imaging system (version 3.0.21; LI-COR Biosciences, Lincoln, NE, USA) was used for densitometry.
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