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5 protocols using ir750

1

Optimized Immunohistochemistry Staining Protocol

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Prior to antibody staining and antigen retrieval, slides were baked at 60°C for 60 min. Deparaffinisation and antigen retrieval was performed using an automated PT link (Dako, heat-mediated antigen retrieval at high pH). An Autostainer Link 48 (Dako) was used to perform antibody staining using an EnVision FLEX visualisation system. Details of antibodies and their working dilutions are shown in supplementary table S1. Using protocols provided by the manufacturer, antibody binding was visualised using a FLEX 3,3′-diaminobenzidine (DAB) substrate working solution and haematoxylin counterstain (Dako). After staining, slides were taken through graded industrial methylated spirit and xylene and mounted in Pertex mounting medium (Histolab). Isotype control staining was performed to confirm specificity of staining, whereby the primary antibody was substituted for universal isotype control antibodies. The murine universal isotype control used was a cocktail of mouse IgG1, IgG2a, IgG2b, IgG3 and IgM (Dako IR750). The universal isotype control for rabbits was an immunoglobulin fraction of serum from non-immunised rabbits, solid-phase absorbed (Dako IR600).
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2

Immunohistochemical Analysis of RAS Components in Meningioma

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Four micrometer thick formalin-fixed paraffin-embedded sections of WHO grade I MG samples from 11 patients were subjected to 3,3-diaminobenzidine (DAB) IHC staining for (pro)renin receptor (PRR) (1:2000; cat# ab40790, Abcam, Cambridge, UK), ACE (1:100; cat# MCA2054, AbD Serotec, Kidlington, UK), ATIIR1 (1:30; cat# ab9391, Abcam and ATIIR2 (1:2000; cat# NBP1-77368, Novus Biologicals, LLC, Littleton, CO, USA). Surgipath Micromount (Leica) was used to mount all the slides. Staining of MG sections with a mouse (ready-to-use; cat# IR750, Dako, Copenhagen, Denmark) and rabbit (ready-to-use; cat# IR600, Dako) primary antibody isotype control combination was performed as an appropriate negative control, as previously described (24 (link)).
Two of the MG samples subjected to DAB IHC staining underwent immunofluorescence (IF) IHC staining using combinations of CD34 (ready-to-use; cat# PA0212, Leica), ERG (ready-to-use; cat# EP111, Cell Marque, Rocklin, CA, USA) (25 (link)), and OCT4 (1:30; cat# MRQ-10, Cell Marque) that highlighted the endothelium and stem cells on the microvessels, respectively (13 (link)). Appropriate positive human control tissues included placenta for PRR, liver for ACE and ATIIR1, and kidney for ATIIR2.
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3

Dual IF IHC Staining Protocol for Protein Localization

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Protein localization was performed on three LGCA and three HGCA and their patient-matched normal colon samples by dual IF IHC staining, carried out on the Leica BOND RX Auto-stainer. Secondary antibodies used were Vectafluor Excel goat anti-mouse 488 (ready-to-use; cat#DK2488, Vector Laboratories, Burlingame, CA, USA) and Alexa Fluor donkey anti-rabbit 594 (1:500; cat#ab150076, Life Technologies, Carlsbad, CA, USA). All stained slides were mounted as previously described [29 (link)]. Negative controls were performed using matched isotype controls for both mouse (ready-to-use; cat#IR750, Dako, Copenhagen, Denmark) and rabbit (ready-to-use; cat#IR600, Dako).
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Dual Immunofluorescence Protein Localization

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Protein co-localization was performed using dual immunofluorescence (IF) staining with the same primary antibodies used for IHC staining. Secondary antibodies used were Vectafluor Excel goat anti-mouse 488 (ready-to-use; cat# DK2488, Vector Laboratories, Burlingame, CA, USA) and Alexa Fluor donkey anti-rabbit 594 (1:500; cat# ab150076, Life Technologies, Carlsbad, CA, USA). All stained slides were mounted using Vecta Shield Hardset mounting medium with 4’,6-diamino-2-phenylindole nuclear stain (cat# H-1200, Vector, Abacus DX, Auckland, New Zealand). Negative controls were performed using matched isotype controls for both mouse (ready-to-use; cat# IR750, Dako, Copenhagen, Denmark) and rabbit (ready-to-use; cat# IR600, Dako).
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5

P53 Protein Expression Analysis via IHC

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P53 protein expression was analyzed via immunohistochemistry. The immunohistochemical expression of p53 was studied using an anti-TP53 monoclonal antibody (clone DO-7, 1:100 dilution; DAKO, Glostrup, Denmark) processed with the EnVision (DAKO) system. The TP53 antibody labels wild-type protein, with a very short half-life and is present in small amounts in normal cells. The mutant-type p53 protein, which is the mutated form, has a longer half-life and is detected via positive staining due to a point mutation. Tumor sections were examined for p53 immunoreactivity under a microscope at 20× and 40× magnifications. The expression of p53 was considered positive when the proportion of positive cells was greater than 10% (Figure 3A). Negative p53 immunostaining resulted in tumor sections (Figure 3B). The IHC results were validated using positive and negative tissue controls in all series of the immunostained slides. Positive controls were used to validate p53 on ovarian carcinoma; these tissues contained the target antigen at a known and stable expression level. Positive endothelial and lymphocyte cells were considered as internal positive controls. The negative controls were set up as neoplastic tissue slides stained using mouse isotype antibody Ready-to-Use FLEX Negative Control Mouse (cocktail of mouse IgG1, IgG2a, IgG2b, IgG3, and IgM, IR750, DAKO, Glostrup, Denmark).
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