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3 protocols using murine r spondin 1

1

Murine Small Intestinal Organoid Culture

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Around 100 freshly isolated crypts were counted and embedded in 50 μl of undiluted Matrigel (356231; Cultek) and culture DMEM/F12 media (D8437; Sigma-Aldrich) supplemented with Pen/Strept, 1× (2 mM) Glutamax (35050038; Gibco or Life Technologies/Thermo Fisher Scientific), 10 mM Hepes (15630049; Gibco or Life Technologies/Thermo Fisher Scientific), 2 mM N-acetyl cysteine (A8199-10G; Sigma-Aldrich), 1× B27 supplement (17504-044; Life Technologies), 10 mM Nicotinamide (N0636-100G; Sigma-Aldrich), 50 ng/ml of recombinant mEGF (PMG8044; Gibco), 100 ng/ml of recombinant Nogging (250-38; PeproTech), 3.5 μM CHIR99021 (GSK3 inhibitor; 2520691; PeproTech), 1 μg/ml murine R-spondin 1 (120-38; Peprotech), 10 μM Y-27632 inhibitor (1293823; PeproTech), and 1% Normocyn (ant-nr-1; InvivoGen; Barriga et al., 2017 (link)). Notably, CHIR99021 (GSK3 inhibitor; 2520691; PeproTech) was kept in culture for 12 h to establish the culture, and the medium was replaced without this inhibitor. The media was changed every 3 d. Depending on the experiment, the crypt culture media was supplemented with 1.5 μg/ml doxycycline (D9891; Sigma-Aldrich) or 1 μM of 4-OHT (H6278; Sigma-Aldrich). Organoids were paraffin-embedded and processed for IF and IHC following the protocols described below.
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2

Directed Differentiation of Intestinal Organoids

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Based upon methods from previous work [20 (link), 21 (link)], we directed differentiation of crypts into organoids enriched in ISCs, ENTs, GOBs, and PANs. Briefly, small molecules (Wnt and Notch activators/inhibitors) including CHIR99021 (3 μM; Stemgent, Cambridge, MA), 2 mM valproic acid (VPA; Tocris Bioscience, United Kingdom), 2 μM C59 (Stemgent, Cambridge, MA), and 10 μM DAPT (Tocris Bioscience, United Kingdom) were added to the base crypt culture medium (CCM) containing EGF (50 ng/ml; Life Technologies), murine R-spondin-1 (500 ng/mL; PeproTech), and murine Noggin (100 ng/mL; PeproTech). Organoids in CCM with all cell types represented are referred to as typical (TYP). ENT, GOB, and PAN organoids are differentiated from ISC organoids, and characterized at ~3 days after initiation of differentiation when biomarker expression becomes stable [20 (link)]. Bright-field images were obtained using an ECLIPSE TS100-F microscope (Nikon, Japan).
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3

Enteroid Monolayer Differentiation Protocol

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Organoid basal media (OBM) consists of Advanced DMEM/F12 with non-essential amino acids and sodium pyruvate (Fisher Scientific #12634–028) containing 1x N-2 (Fisher Scientific #17502–048), 1x B-27 (Invitrogen #17504–044), 10 mM HEPES (Invitrogen #15630080), 1x GlutaMAX (Invitrogen #35050–061), 1 μM N-acetylcysteine (Sigma Aldrich #A9165), 100 U/mL penicillin and 100 μg/mL streptomycin (Corning #30–002).
For initial seeding, enteroid monolayers were maintained in OBM supplemented with 3 μM CHIR-99021 (Sigma Aldrich #SML1046), 50 ng/mL murine EGF (Invitrogen #PMG8043), 1 μM LDN-193189 (Sigma Aldrich #SML0559), 500 ng/mL murine R-spondin-1 (Peprotech #315–32), and 10 μM Y-27632 (Selleck Chemicals #S1049).
4 hours after initial seeding, media was changed into OBM supplemented with 50 ng/mL murine EGF, 100 ng/mL murine Noggin, and 500 ng/mL murine R-spondin-1. Perturbations applied in the studies described here were all applied in the background of this medium.
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