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4 protocols using anti h3k27ac 39133

1

LNCaP Cell Culture and Antibody Usage

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LNCaP cells were obtained from American Type Culture Collection and passaged in our laboratory for less than 6 months after resuscitation. LNCaP cells are maintained in RMPI 1640 culture medium supplemented with 10% fetal bovine serum in a 37°C humidified chamber supplemented with 5% CO2. Antibodies used in this study include anti- H3K27ac (39133) from Active Motif, anti-FOXA1 (ab23738) from Abcam, anti-AR (sc-815X), anti-GATA2(sc-9008) and anti-HOXB13(sc-66923) from Santa Cruz
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2

Antibody Validation for Protein Analysis

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The following antibodies were used: anti-SKI (sc-9140, Santa Cruz); anti-RUNX1 (ab23980, Abcam); anti-CDK2 (sc-163, Santa Cruz); anti-Flag (F3163, Sigma); anti-HA (HA.11 clone 16B12; Covance); anti-H3K4me3 (07-473, Millipore); anti-H3K27ac (39133, Active Motif); rabbit IgG (I5006, Sigma).
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3

Immunoprecipitation and Western Blotting Workflow

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The antibodies for immunoprecipitation were anti-LSD1 (ab17721, Abcam, Cambridge, UK), anti-GFI1B (sc-28356X, Santa Cruz Biotech, Dallas, TX, USA), anti-RUNX1 (ab23980, Abcam), anti-H3K27ac (39133, Active Motif, Carlsbad, CA, USA), anti-CoREST (ab32631, Abcam), normal rabbit IgG (sc-2027, Santa Cruz), and normal mouse IgG (sc-2025, Santa Cruz). The primary antibodies for western blotting were anti-LSD1 (C69G12, Millipore, Billerica, MA, USA), anti-CoREST (ab32631, Abcam), anti-HDAC1 (ab7028, Abcam), anti-HDAC2 (ab7029, Abcam), anti-GFI1B (sc-28356X or sc-22795, Santa Cruz), anti-RUNX1 (ab23980, Abcam, or sc-365644, Santa Cruz), anti-ERG (ab133264, Abcam), and anti-ACTIN (sc-1616, Santa Cruz). The secondary antibodies were anti-rabbit IgG (NA934V, GE Healthcare, Little Chalfont, UK), anti-mouse IgG (NA931V, GE Healthcare), and anti-goat IgG (sc-2020, Santa Cruz) conjugated with horseradish peroxidase.
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4

Chromatin Immunoprecipitation and Analysis

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ChIP assays were performed as previously described (Xiao et al., 2015 (link)). All primers used in ChIP-PCR are displayed in Table S1. Anti-H3Ac (39139), anti-H4Ac (39243), anti-H3K27Ac (39133; all from Active Motif), anti-H3K9Ac (ab4441; Abcam), and anti-Flag (F1804; Sigma-Aldrich) were used for the immunoprecipitation of chromatin with an EZ ChIP kit according to the manufacturer’s instructions (Millipore). The precipitated DNA was then analyzed by real-time PCR. Data are presented as relative binding based on normalization to input DNA (Staudt et al., 2010 (link)).
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