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Nis element d v 4

Manufactured by Nikon

NIS-Element D V.4.11 is a software package developed by Nikon for the analysis and processing of microscope images. The software provides a range of tools for image acquisition, analysis, and management, catering to the needs of researchers and scientists working with microscopy equipment.

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2 protocols using nis element d v 4

1

Calcium Oxalate Crystal Formation Assay

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COM crystallization assay was performed according to a protocol established previously18 (link)40 (link). Briefly, 0.5 ml of 10 mM calcium chloride (Sigma-Aldrich; St. Louis, MO) in basic buffer containing 10 mM Tris and 90 mM NaCl (VWR; Leuven, Belgium) was added into 24-well polystyrene plate (Corning Inc.; Corning, NY) in the absence or presence of purified caffeine (Sigma) with various concentrations of 1 μM, 10 μM, 100 μM, 1 mM, and 10 mM. For the control, an equal volume of the basic buffer was added instead of caffeine. Thereafter, 0.5 ml of 1 mM sodium oxalate (Sigma-Aldrich) in basic buffer was added into each well of the mixture. After 60-min incubation at room temperature (RT) (set at 25 °C), the crystal images were taken using an inverted light microscope (Nikon eclipse Ti; Nikon; Tokyo, Japan). Crystal size was then analyzed using crystal area measured by NIS-element D V.4.11 software (Nikon) from at least 100 individual crystals in each well. Crystal number in each well was counted from 15 high-power fields (HPFs). Crystal mass was calculated using the formula:

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2

Caffeine Effects on Calcium Oxalate Crystals

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COM crystals were prepared in 24-well polystyrene plate by mixing 10 mM calcium chloride with 1 mM sodium oxalate in basic buffer to make their final concentrations of 5 mM and 0.5 mM, respectively. After 60-min incubation at RT, caffeine with various doses (1 μM, 10 μM, 100 μM, 1 mM, and 10 mM) was added to the crystal mixture and the crystals were immediately imaged (set as T0) under an inverted light microscope (Nikon eclipse Ti). After further 60-min incubation at RT, crystal images were then again captured (set as T60) under an inverted light microscope (Nikon eclipse Ti). The crystal sizes at T0 and T60 were then analyzed from at least 100 individual crystals per well using NIS-element D V.4.11 software (Nikon) and crystal growth was calculated from Δ crystal area using the formula:

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