The BIRC5 mRNA TaqMan probe (Hs04194392_s1; ThermoFisher Scientific, Madrid, Spain) was used to determine survivin mRNA levels and the Cyclophilin (PP1A) mRNA TaqMan probe (Hs04194521_s1, ThermoFisher Scientific, Madrid, Spain) was used as the endogenous control. The reaction was conducted in 20 μL containing 1xTaqMan Universal PCR Mastermix (Applied Biosystems, Madrid, Spain), 0.5xTaqMan probe, and 3 μL of cDNA. PCR cycling conditions were 10 min denaturation at 95 °C, followed by 40 cycles of 15 s at 95 °C, and 1 min at 60 °C using a QuantStudio 3 Real-Time PCR System (Applied Biosystems, Barcelona, Spain). The quantification was performed using the ΔΔCt method, where Ct is the threshold cycle that corresponds to the cycle when the amount of amplified mRNA reaches the fluorescence threshold.
Quantification of Survivin mRNA Levels
The BIRC5 mRNA TaqMan probe (Hs04194392_s1; ThermoFisher Scientific, Madrid, Spain) was used to determine survivin mRNA levels and the Cyclophilin (PP1A) mRNA TaqMan probe (Hs04194521_s1, ThermoFisher Scientific, Madrid, Spain) was used as the endogenous control. The reaction was conducted in 20 μL containing 1xTaqMan Universal PCR Mastermix (Applied Biosystems, Madrid, Spain), 0.5xTaqMan probe, and 3 μL of cDNA. PCR cycling conditions were 10 min denaturation at 95 °C, followed by 40 cycles of 15 s at 95 °C, and 1 min at 60 °C using a QuantStudio 3 Real-Time PCR System (Applied Biosystems, Barcelona, Spain). The quantification was performed using the ΔΔCt method, where Ct is the threshold cycle that corresponds to the cycle when the amount of amplified mRNA reaches the fluorescence threshold.
Corresponding Organization :
Other organizations : Universitat de Barcelona, Institut de Nanociència i Nanotecnologia de la Universitat de Barcelona
Variable analysis
- PPRH transfection
- BIRC5 mRNA levels
- Total RNA from control cells
- Total RNA from PPRH-transfected cells
- Incubation time (24 h and 48 h)
- Reverse transcription reaction components (0.5 mM dNTPs, 250 ng random hexamers, 10 mM DTT, 200 units RT, 20 units RNase inhibitor, 4 μL 5X buffer)
- TaqMan probes for BIRC5 mRNA and Cyclophilin (PP1A) mRNA
- TaqMan Universal PCR Mastermix
- PCR cycling conditions (10 min denaturation at 95 °C, 40 cycles of 15 s at 95 °C and 1 min at 60 °C)
- QuantStudio 3 Real-Time PCR System
- Total RNA from control cells (negative control)
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