TB recurrence was defined as a patient who was cured or completed treatment during the most recent course of treatment and then was re-diagnosed with a new TB episode [World Health Organization (WHO), 2013 ]. Reinfection was defined as a recurrent disease episode caused by a new TB strain with a genetic distance of more than 12 SNPs compared with the strain that caused the original episode. Relapse was defined as a genetic distance of 12 or fewer SNPs between paired strains isolated from two episodes in TB recurrence (Li et al., 2022 (link)). The recurrent interval was defined as the time interval between the recorded end date of the initial TB treatment and the date of the re-diagnosis of active TB (Ruan et al., 2022 (link)). Based on the phenotypic drug susceptibility testing, Pan-Susceptible was defined as MTB strains that were susceptible to all anti-TB drugs tested in this study (including rifampicin, isoniazid, ethambutol, streptomycin, moxifloxacin, ofloxacin, kanamycin and amikacin), whereas Drug-resistant was defined as MTB strains that were resistant to at least one of these anti-TB drugs but not include the concurrent resistance to rifampicin and isoniazid. MDR-TB was defined as MTB resistance to at least isoniazid and rifampicin. Pre-XDR-TB was defined as MDR-TB with additional resistance to any fluoroquinolones (moxifloxacin or ofloxacin) or any second-line injectable drugs (amikacin or kanamycin), but not both. XDR-TB was defined as MDR-TB with additional resistance to any fluoroquinolones and any second-line injectable drugs.
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