Caco-2 cells were fixed using 4% Paraformaldehyde (PFA) in cytoskeleton stabilisation buffer (10mM PIPES at pH 6.8, 100mM KCl, 300mM sucrose, 2mM EGTA and 2mM MgCl2) for 20 min at room temperature (RT) or were fixed using 100% methanol for 10 min at −20°C. Staining for Myosin VI, DP, keratin-8, keratin-18, Dsg2, tagRFPT and GFP required pre-permeabilisation of cells (0.1% Triton in PBS) for 3 min on ice before fixation with PFA. Subsequently, the fixed cells were blocked in 3% Bovine Serum Albumin (BSA) in PBS at RT for 1 hour. Following this, cells were incubated with primary antibody for 1 hour at RT. For Myosin VI and Dsg2 primary antibodies, the cells were incubated overnight at 4°C. Then, the cells were washed with 0.05% Tween in PBS before incubating with the corresponding secondary antibodies at RT for 1 hour. Following this, the coverslips were mounted using Prolong gold (Genesearch #8916BC) with or without DAPI.
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